SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432334A>C COSM3006109 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130b-5p ttatGAAAGAGacag ACUCUUUC m7b Disrupted HPTA3_13290_G21135.1_160150127
hsa-miR-4753-3p ttatgAAAGAGAcag UUCUCUUU m7b Disrupted HPTA3_13290_G21135.1_160150127
hsa-miR-6818-3p ttatgaaAGAGACAg UUGUCUCU m7b Disrupted HPTA3_13290_G21135.1_160150127

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432325A>G COSM4442149 C467 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3942-5p caaaATTGCTTatga AAGCAAUA m7a Created HPTA3_13290_G21135.1_160150127
hsa-miR-4775 cAAAATTActtatga UUAAUUUU m7b Disrupted HPTA3_13290_G21135.1_160150127

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPTA3_13289_G21134.1_160149543
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HPTA3_13289_G21134.1_160149543
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HPTA3_13289_G21134.1_160149543
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPTA3_13289_G21134.1_160149543

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160404774C>T COSN500331 TCGA-BS-A0UL-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-3p atatTGGCGTagtga AACGCCAU m6b Disrupted HPTA3_13285_G21130.1_160122550

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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