SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160433751A>C COSM4114922 TCGA-HU-A4HD-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4781-3p acataCAACATaaca AAUGUUGG m6b Disrupted HPRO6_54258_G64469.1_160151545

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160433200T>G COSM1040618 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-3p ttgcaTTGTATAtat CUAUACAA m7b Created HPRO6_54257_G64467.1_160150983
hsa-let-7b-3p ttgcaTTGTATAtat CUAUACAA m7b Created HPRO6_54257_G64467.1_160150983
hsa-let-7f-1-3p ttgcaTTGTATAtat CUAUACAA m7b Created HPRO6_54257_G64467.1_160150983
hsa-miR-1185-1-3p ttgcatTGTATATat AUAUACAG m7a Created HPRO6_54257_G64467.1_160150983
hsa-miR-1185-2-3p ttgcatTGTATATat AUAUACAG m7a Created HPRO6_54257_G64467.1_160150983
hsa-miR-3163 ttgcATTTTATAtat UAUAAAAU m8a Disrupted HPRO6_54257_G64467.1_160150983
hsa-miR-3662 ttgCATTTTatatat GAAAAUGA m6b Disrupted HPRO6_54257_G64467.1_160150983
hsa-miR-410-3p ttgcattTTATATat AAUAUAAC m6b Disrupted HPRO6_54257_G64467.1_160150983
hsa-miR-4666a-3p ttgcATTGTATatat CAUACAAU m7b Created HPRO6_54257_G64467.1_160150983
hsa-miR-98-3p ttgcaTTGTATAtat CUAUACAA m7b Created HPRO6_54257_G64467.1_160150983

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160433195G>T COSM1720499 1_RESISTANT [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3646 cattgtTTCATTTTa AAAAUGAA m8a Created HPRO6_54257_G64467.1_160150983
hsa-miR-3662 cattgttTCATTTTa GAAAAUGA m7b Created HPRO6_54257_G64467.1_160150983

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160433136C>T COSM1693699 YUKLAB [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3173-3p cccactCTCCTTTac AAAGGAGG m7a Created HPRO6_54256_G64466.1_160150917
hsa-miR-4428 cccacTCTCCTTtac CAAGGAGA m7b Created HPRO6_54256_G64466.1_160150917
hsa-miR-4481 CCCACTCCcctttac GGAGUGGG m8a Disrupted HPRO6_54256_G64466.1_160150917
hsa-miR-4693-3p ccCACTCTCctttac UGAGAGUG m7b (m6b->m7b) HPRO6_54256_G64466.1_160150917
hsa-miR-5192 cccACTCTCCTttac AGGAGAGU m8a Created HPRO6_54256_G64466.1_160150917

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432462C>T COSM1040614 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1469 gggaCGCCGAactcg CUCGGCGC m6b Disrupted HPRO6_54255_G64465.2_160150226
hsa-miR-5000-5p gggacgCTGAACTcg CAGUUCAG m7b Created HPRO6_54255_G64465.2_160150226

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432459C>T COSM3006111 T3262 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1469 gaggggaCGCCGAac CUCGGCGC m6b Disrupted HPRO6_54255_G64465.2_160150226
hsa-miR-324-5p gagGGGATGCcgaac CGCAUCCC m7b Created HPRO6_54255_G64465.2_160150226
hsa-miR-4304 gaggggATGCCGaac CCGGCAUG m6b Created HPRO6_54255_G64465.2_160150226
hsa-miR-6729-3p gaGGGGATGccgaac UCAUCCCC m7b (m6b->m7b) HPRO6_54255_G64465.2_160150226

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432440T>C COSM4153006 C0081T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1179 taccaAATGCTTact AAGCAUUC m7a Disrupted HPRO6_54255_G64465.2_160150226
hsa-miR-5002-5p tACCAAATgcttact AAUUUGGU m7b Disrupted HPRO6_54255_G64465.2_160150226

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432417T>A COSM4778041 24 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-5p taaCAAAAAaattaa CUUUUUGC m6b Created HPRO6_54254_G64465.1_160150185
hsa-miR-32-3p taacaaaTAAATTaa CAAUUUAG m6b Disrupted HPRO6_54254_G64465.1_160150185
hsa-miR-4775 taacaaaAAAATTAa UUAAUUUU m7b Created HPRO6_54254_G64465.1_160150185
hsa-miR-590-3p taacaaaAAAATTAa UAAUUUUA m7a Created HPRO6_54254_G64465.1_160150185

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432325A>G COSM4442149 C467 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3942-5p caaaATTGCTTatga AAGCAAUA m7a Created HPRO6_54253_G64464.1_160150119
hsa-miR-4775 cAAAATTActtatga UUAAUUUU m7b Disrupted HPRO6_54253_G64464.1_160150119

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HPRO6_54252_G64463.1_160149543
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HPRO6_54252_G64463.1_160149543
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPRO6_54252_G64463.1_160149543
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPRO6_54252_G64463.1_160149543

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160404774C>T COSN500331 TCGA-BS-A0UL-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-3p atatTGGCGTagtga AACGCCAU m6b Disrupted HPRO6_54241_G64448.1_160122550

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser