SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HPHES_5504_G7310.1_160149542
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HPHES_5504_G7310.1_160149542
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPHES_5504_G7310.1_160149542
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPHES_5504_G7310.1_160149542

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160404823G>T COSN523448 TCGA-A8-A093-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6773-3p ttagtGTGACAGgga ACUGUCAC m7b Disrupted HPHES_5503_G7308.1_160122632
hsa-miR-216b-3p ttAGTGTGacaggga ACACACUU m6b Disrupted HPHES_5503_G7308.1_160122632
hsa-miR-339-5p ttagtgtGACAGGGa UCCCUGUC m7b Disrupted HPHES_5503_G7308.1_160122632

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160404774C>T COSN500331 TCGA-BS-A0UL-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-3p atatTGGCGTagtga AACGCCAU m6b Disrupted HPHES_5501_G7306.1_160122549

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser