SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160432440T>C COSM4153006 C0081T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1179 taccaAATGCTTact AAGCAUUC m7a Disrupted HPCB1_27290_G34765.1_160150227
hsa-miR-5002-5p tACCAAATgcttact AAUUUGGU m7b Disrupted HPCB1_27290_G34765.1_160150227

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HPCB1_27289_G34764.1_160149543
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HPCB1_27289_G34764.1_160149543
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPCB1_27289_G34764.1_160149543
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HPCB1_27289_G34764.1_160149543

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431658C>T COSM3006097 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6499-3p aatatCACTGCatcc AGCAGUGU m6b Disrupted HPCB1_27288_G34763.1_160149447
hsa-miR-106a-3p aatatCATTGCAtcc CUGCAAUG m7b Created HPCB1_27288_G34763.1_160149447

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431654A>G COSM3006096 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3689e caaaaATATCACtgc UGUGAUAU m7b Disrupted HPCB1_27288_G34763.1_160149447
hsa-miR-3689b-5p caaaaATATCACtgc UGUGAUAU m7b Disrupted HPCB1_27288_G34763.1_160149447
hsa-miR-3689a-5p caaaaATATCACtgc UGUGAUAU m7b Disrupted HPCB1_27288_G34763.1_160149447
hsa-miR-3145-3p caaAAATATCactgc AGAUAUUU m7b Disrupted HPCB1_27288_G34763.1_160149447
hsa-miR-153-5p cAAAAATGtcactgc UCAUUUUU m7b Created HPCB1_27288_G34763.1_160149447
hsa-miR-5190 caaaaatGTCACTGc CCAGUGAC m7b Created HPCB1_27288_G34763.1_160149447
hsa-miR-3689f caaaaATATCACtgc UGUGAUAU m7b Disrupted HPCB1_27288_G34763.1_160149447

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160404774C>T COSN500331 TCGA-BS-A0UL-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-3p atatTGGCGTagtga AACGCCAU m6b Disrupted HPCB1_27286_G34761.1_160122549

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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