SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431817A>G COSM3006105 SNU-C1 [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-627-3p agagtatGAAAAGAa UCUUUUCU m7a Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-539-3p agaGTATGAaaagaa AUCAUACA m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-485-3p agaGTATGAaaagaa GUCAUACA m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-335-3p agagtATGAAAAgaa UUUUUCAU m7b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-1-5p agAGTATGaaaagaa ACAUACUU m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431781G>A COSM4827069 TCGA-C5-A1MK-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p gtgtcatAAAATGaa ACAUUUUC m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-153-5p gtgtcatAAAATGAa UCAUUUUU m7a Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-433-3p gtgTCATGAaatgaa AUCAUGAU m6b Disrupted HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-7154-5p gtgTCATGAAatgaa UUCAUGAA m7a Disrupted HHRBL_10341_BCBL1-2of3-SCL_1415

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HHRBL_10341_BCBL1-2of3-SCL_1415

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431723G>A COSM4728409 T207 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3977 tTGAAGCAatcaaga GUGCUUCA m7b Created HHRBL_10341_BCBL1-2of3-SCL_1415
Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431722C>T COSM1040612 TCGA-AX-A0J1-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431718G>C COSM1186454 LC_C34 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p ggATCTTCaagcgat AGAAGAUU m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-4635 ggatCTTCAAGcgat UCUUGAAG m7b Created HHRBL_10341_BCBL1-2of3-SCL_1415

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431695C>T COSM1226833 587222 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8063 gaGATTTTGgttcta UCAAAAUC m7b (m6b->m7b) HHRBL_10341_BCBL1-2of3-SCL_1415

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431683T>G COSM1040610 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6837-3p aatcctAGTGAAGag CCUUCACU m7b Created HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-6826-5p aatCCTATTGAagag UCAAUAGG m8a Disrupted HHRBL_10341_BCBL1-2of3-SCL_1415
hsa-miR-412-3p aatcctaGTGAAGag ACUUCACC m6b Created HHRBL_10341_BCBL1-2of3-SCL_1415

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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