SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002800
Gene Symbol: SMC4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.160433768G>A COSM3723648 288 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-144-3p aagtgtTACTGTAaa UACAGUAU m7a Created HHHNA_16902_SMC4|NM_005496|exon_utr3|-8.03852585046294|1.18203395084815
hsa-miR-3120-3p aagtgTTGCTGTaaa CACAGCAA m7b Disrupted HHHNA_16902_SMC4|NM_005496|exon_utr3|-8.03852585046294|1.18203395084815
hsa-miR-582-5p aagtgttACTGTAAa UUACAGUU m7a Created HHHNA_16902_SMC4|NM_005496|exon_utr3|-8.03852585046294|1.18203395084815
hsa-miR-802 aagTGTTACTGtaaa CAGUAACA m8a Created HHHNA_16902_SMC4|NM_005496|exon_utr3|-8.03852585046294|1.18203395084815
hsa-miR-101-3p aagtgtTACTGTAaa UACAGUAC m7a Created HHHNA_16902_SMC4|NM_005496|exon_utr3|-8.03852585046294|1.18203395084815

Mutation Mutation ID Sample Name Cancer Type
chr3:g.160431764T>C COSM315444 S00943 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-5p gcactttTGGAAGCc AGCUUCCA m7b Disrupted HHHNA_16901_SMC4|NM_005496|exon_CDS|-6.35312026601613|0.890594833003063
hsa-miR-526b-3p GCACTTTCggaagcc GAAAGUGC m8a Created HHHNA_16901_SMC4|NM_005496|exon_CDS|-6.35312026601613|0.890594833003063
hsa-miR-548az-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HHHNA_16901_SMC4|NM_005496|exon_CDS|-6.35312026601613|0.890594833003063
hsa-miR-548t-5p gCACTTTTGgaagcc CAAAAGUG m8a (m8a->m7a) HHHNA_16901_SMC4|NM_005496|exon_CDS|-6.35312026601613|0.890594833003063

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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