SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001992
Gene Symbol: USP16

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.29054182C>A COSM173172 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-101-3p gagaaTACTGTAata UACAGUAC m7a Disrupted HPRO6_50201_G59506.1_30426516
hsa-miR-144-3p gagaATACTGTAata UACAGUAU m8a Disrupted HPRO6_50201_G59506.1_30426516
hsa-miR-16-1-3p gagAATACTGtaata CCAGUAUU m7b Disrupted HPRO6_50201_G59506.1_30426516
hsa-miR-323a-3p gagaaTAATGTaata CACAUUAC m6b Created HPRO6_50201_G59506.1_30426516
hsa-miR-630 gAGAATACTgtaata AGUAUUCU m8a (m8a->m7a) HPRO6_50201_G59506.1_30426516
hsa-miR-6504-3p gagaataCTGTAATa CAUUACAG m7b Disrupted HPRO6_50201_G59506.1_30426516

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29046800A>G COSM1681906 HCT-15 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-758-5p tcCAACCATatttca GAUGGUUG m7b (m7b->m6b) HPRO6_50195_G59500.1_30419111
hsa-miR-584-5p tccAACCATAtttca UUAUGGUU m7b Disrupted HPRO6_50195_G59500.1_30419111
hsa-miR-5583-3p tccaaCCATATTtca GAAUAUGG m7b Disrupted HPRO6_50195_G59500.1_30419111
hsa-miR-758-5p tcCAACCATatttca GAUGGUUG m7b (m7b->m6b) HPRO6_50195_G59500.1_30419111
hsa-miR-218-2-3p tccAACCATatttca CAUGGUUC m6b Disrupted HPRO6_50195_G59500.1_30419111
hsa-miR-5583-3p tccaaCCATATTtca GAAUAUGG m7b Disrupted HPRO6_50195_G59500.1_30419111
hsa-miR-584-5p tccAACCATAtttca UUAUGGUU m7b Disrupted HPRO6_50195_G59500.1_30419111
hsa-miR-218-2-3p tccAACCATatttca CAUGGUUC m6b Disrupted HPRO6_50195_G59500.1_30419111

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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