SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001992
Gene Symbol: USP16

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.29054182C>A COSM173172 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-101-3p gagaaTACTGTAata UACAGUAC m7a Disrupted HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
hsa-miR-144-3p gagaATACTGTAata UACAGUAU m8a Disrupted HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
hsa-miR-16-1-3p gagAATACTGtaata CCAGUAUU m7b Disrupted HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
hsa-miR-323a-3p gagaaTAATGTaata CACAUUAC m6b Created HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
hsa-miR-630 gAGAATACTgtaata AGUAUUCU m8a (m8a->m7a) HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
hsa-miR-6504-3p gagaataCTGTAATa CAUUACAG m7b Disrupted HHKTA_3474_NM_001032410|2720|2759|17.7398558312204|1.33883766371771
Mutation Mutation ID Sample Name Cancer Type
chr21:g.29054155G>T COSM1029772 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr21:g.29054138A>C COSM1413551 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 acaaCTACAGTacta CACUGUAG m7b Created HHKTA_25406_NM_001032410|2680|2719|2.94221999151948|1.33883766371771
hsa-miR-1278 acaactaCAGTACTa UAGUACUG m7b Created HHKTA_25406_NM_001032410|2680|2719|2.94221999151948|1.33883766371771
hsa-miR-20b-3p acaACTACAGTacta ACUGUAGU m8a Created HHKTA_25406_NM_001032410|2680|2719|2.94221999151948|1.33883766371771
hsa-miR-4703-3p aCAACTACAgtacta UGUAGUUG m8a (m7a->m8a) HHKTA_25406_NM_001032410|2680|2719|2.94221999151948|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29047176CAG>C COSM1167686 MEL-Ma-Mel-122 [NS][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-3p ttgcaAACAGGGaagtt CCCUGUUC m7a Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-1282 ttGCAAACGgaagtt UCGUUUGC m7b (m6b->m7b) HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-1468-5p ttgcAAACGGAagtt CUCCGUUU m7b Created HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-339-5p ttgcaaACAGGGAagtt UCCCUGUC m7a Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-557 tTGCAAACagggaagtt GUUUGCAC m7a Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-670-5p ttgcaaaCAGGGAagtt GUCCCUGA m6b Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29047167T>G COSM4430478 408 [haematopoietic_and_lymphoid_tissue][lymph_node][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4696 tctgtacTCTTGCAa UGCAAGAC m7a Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771
hsa-miR-4696 tctgtacTCTTGCAa UGCAAGAC m7a Disrupted HHKTA_37632_NM_001032410|2111|2150|2.03359322943258|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29047051T>G COSM1029765 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p cctaAATGTGAAtgc UUCACAUU m8a Created HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-23a-3p cctaAATGTGAatgc AUCACAUU m7b Created HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-23b-3p cctaAATGTGAatgc AUCACAUU m7b Created HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-23c cctaAATGTGAatgc AUCACAUU m7b Created HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-32-3p cCTAAATTtgaatgc CAAUUUAG m7b Disrupted HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-3671 cctaaATTTGAatgc AUCAAAUA m6b Disrupted HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771
hsa-miR-607 cctaaATTTGAAtgc GUUCAAAU m7b Disrupted HHKTA_22044_NM_001032410|1977|2016|3.3316314609853|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29046808C>A COSM4435252 448 [oesophagus][upper_third][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-203a-3p tATTTCACaagaggg GUGAAAUG m7a Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-510-3p taTTTCAAaagaggg AUUGAAAC m6b Created HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-203a-3p tATTTCACaagaggg GUGAAAUG m7a Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-510-3p taTTTCAAaagaggg AUUGAAAC m6b Created HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29046800A>G COSM4295285 HCT15 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-218-2-3p tccAACCATatttca CAUGGUUC m6b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-5583-3p tccaaCCATATTtca GAAUAUGG m7b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-584-5p tccAACCATAtttca UUAUGGUU m7b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-758-5p tcCAACCATatttca GAUGGUUG m7b (m7b->m6b) HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-218-2-3p tccAACCATatttca CAUGGUUC m6b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-5583-3p tccaaCCATATTtca GAAUAUGG m7b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-584-5p tccAACCATAtttca UUAUGGUU m7b Disrupted HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771
hsa-miR-758-5p tcCAACCATatttca GAUGGUUG m7b (m7b->m6b) HHKTA_52799_NM_001032410|1727|1766|1.29803823155271|1.33883766371771

Mutation Mutation ID Sample Name Cancer Type
chr21:g.29027926C>T COSM3550047 TCGA-EE-A2MI-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-5p aaagAAACGGAcaaa CUCCGUUU m7b Disrupted HHKTA_48958_NM_001032410|240|279|1.42784205470798|1.33883766371771
hsa-miR-3912-5p aaagaaATGGACAaa AUGUCCAU m7b Created HHKTA_48958_NM_001032410|240|279|1.42784205470798|1.33883766371771

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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