SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001975
Gene Symbol: ATP5D
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.1241937G>A COSM4074318 TCGA-BR-8487-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-3p ccgccCCAGCTGccg UCAGCUGG m7b Created HHHNA_11278_ATP5D|NM_001001975|exon_CDS|-0.945735653648478|0.240867072827492
hsa-miR-4731-5p ccgCCCCAGCtgccg UGCUGGGG m7b Created HHHNA_11278_ATP5D|NM_001001975|exon_CDS|-0.945735653648478|0.240867072827492
hsa-miR-6784-5p ccGCCCCGGCtgccg GCCGGGGC m8a Disrupted HHHNA_11278_ATP5D|NM_001001975|exon_CDS|-0.945735653648478|0.240867072827492
hsa-miR-6816-5p CCGCCCCAgctgccg UGGGGCGG m8a Created HHHNA_11278_ATP5D|NM_001001975|exon_CDS|-0.945735653648478|0.240867072827492

Mutation Mutation ID Sample Name Cancer Type
chr19:g.1241838G>C COSN1210895 HCC14T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1908-5p tcctgccCCCCGCCg CGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-328-5p tcctGCCCCCCgccg GGGGGGGC m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-4767 tcctgcCGCCCGCcg CGCGGGCG m7b Disrupted HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-486-3p tcCTGCCCCccgccg CGGGGCAG m7b (m6b->m7b) HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-663a tcctgccCCCCGCCg AGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6721-5p tCCTGCCCcccgccg UGGGCAGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6787-5p tcctgccCCCCGCCg UGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6820-5p tcCTGCCGCccgccg UGCGGCAG m7b (m7b->m6b) HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6885-5p tcctGCCCCCCgccg AGGGGGGC m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-1908-5p tcctgccCCCCGCCg CGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-328-5p tcctGCCCCCCgccg GGGGGGGC m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-4767 tcctgcCGCCCGCcg CGCGGGCG m7b Disrupted HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-486-3p tcCTGCCCCccgccg CGGGGCAG m7b (m6b->m7b) HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-663a tcctgccCCCCGCCg AGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6721-5p tCCTGCCCcccgccg UGGGCAGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6787-5p tcctgccCCCCGCCg UGGCGGGG m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6820-5p tcCTGCCGCccgccg UGCGGCAG m7b (m7b->m6b) HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152
hsa-miR-6885-5p tcctGCCCCCCgccg AGGGGGGC m7b Created HHHNA_11276_ATP5D|NM_001001975|exon_utr5|-0.841382347415758|2.50384258199152

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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