SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001664
Gene Symbol: SPOPL

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569074G>C COSM1193130 H838 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-122-5p taaaACACTCCtgaa UGGAGUGU m7b Created HHFKP_83649_cluster-13179_13_8
hsa-miR-3169 taaaaCAGTCCTgaa UAGGACUG m7b Disrupted HHFKP_83649_cluster-13179_13_8
hsa-miR-3659 taaAACACTCctgaa UGAGUGUU m7b Created HHFKP_83649_cluster-13179_13_8
hsa-miR-4433a-3p taaaacACTCCTGaa ACAGGAGU m7b Created HHFKP_83649_cluster-13179_13_8
hsa-miR-4433b-3p taaaaCACTCCTGaa CAGGAGUG m8a Created HHFKP_83649_cluster-13179_13_8
hsa-miR-4436a taaaacaGTCCTGaa GCAGGACA m6b Disrupted HHFKP_83649_cluster-13179_13_8
hsa-miR-4459 taaaacaCTCCTGaa CCAGGAGG m6b Created HHFKP_83649_cluster-13179_13_8
hsa-miR-452-5p taAAACAGTcctgaa AACUGUUU m7b (m7b->m6b) HHFKP_83649_cluster-13179_13_8
hsa-miR-4676-3p taAAACAGTcctgaa CACUGUUU m7b (m7b->m6b) HHFKP_83649_cluster-13179_13_8
hsa-miR-4768-3p taaaacaCTCCTGaa CCAGGAGA m6b Created HHFKP_83649_cluster-13179_13_8
hsa-miR-5000-3p taaaacaGTCCTGAa UCAGGACA m7a Disrupted HHFKP_83649_cluster-13179_13_8
hsa-miR-8083 taaaacAGTCCTGaa CAGGACUU m7a Disrupted HHFKP_83649_cluster-13179_13_8
hsa-miR-892c-3p taAAACAGTcctgaa CACUGUUU m7b (m7b->m6b) HHFKP_83649_cluster-13179_13_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138569063C>T COSM4970595 SJHGG034_D [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1282 acGCAAACGgctaaa UCGUUUGC m7b (m7b->m6b) HHFKP_83649_cluster-13179_13_8
hsa-miR-4662a-5p acgcaaaTGGCTAAa UUAGCCAA m7a Created HHFKP_83649_cluster-13179_13_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138568986C>G COSM3117066 TCGA-DS-A1OA-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3117-5p attcAGTGTCaccct AGACACUA m6b Created HHFKP_83647_cluster-13179_10_9
hsa-miR-3672 attcAGTCTCAccct AUGAGACU m7b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-4463 attCAGTCTCaccct GAGACUGG m7a Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-4499 atTCAGTCTcaccct AAGACUGA m7b (m7b->m6b) HHFKP_83647_cluster-13179_10_9
hsa-miR-6864-3p attcAGTCTCACcct GUGAGACU m8a Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-873-3p attCAGTCTCaccct GGAGACUG m7b Disrupted HHFKP_83647_cluster-13179_10_9

Mutation Mutation ID Sample Name Cancer Type
chr2:g.138568974C>T COSM3894856 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2681-3p tggaagtCCATGATt UAUCAUGG m7b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-490-5p tggaagTCCATGatt CCAUGGAU m6b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-5009-5p tggAAGTCCAtgatt UUGGACUU m7b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-617 tGGAAGTCcatgatt AGACUUCC m7b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-7154-5p tggaagTTCATGAtt UUCAUGAA m7b Created HHFKP_83647_cluster-13179_10_9
hsa-miR-8058 tggAAGTCCAtgatt CUGGACUU m7b Disrupted HHFKP_83647_cluster-13179_10_9
hsa-miR-8060 tggaagTTCATGatt CCAUGAAG m6b Created HHFKP_83647_cluster-13179_10_9

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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