SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001655
Gene Symbol: ALKBH2

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr12:g.109088315T>C COSM4953975 CHC432T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.109088289T>C COSM1946043 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1263 gcactGGTACCAcag AUGGUACC m7b Disrupted HHKTA_26197_NM_001145374|1063|1102|2.85568410941597|1.26015126100044

Mutation Mutation ID Sample Name Cancer Type
chr12:g.109088284C>T COSM1244842 ESO-0280 [oesophagus][lower_third][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4318 ggtaCCACAGTcttc CACUGUGG m7b Disrupted HHKTA_26197_NM_001145374|1063|1102|2.85568410941597|1.26015126100044
hsa-miR-5579-5p gGTACCATAgtcttc UAUGGUAC m8a (m7a->m8a) HHKTA_26197_NM_001145374|1063|1102|2.85568410941597|1.26015126100044
hsa-miR-1263 GGTACCATagtcttc AUGGUACC m8a Created HHKTA_26197_NM_001145374|1063|1102|2.85568410941597|1.26015126100044

Mutation Mutation ID Sample Name Cancer Type
chr12:g.109088283A>C COSM4935568 TCGA-ED-A459-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4318 gtaCCACAGTcttcc CACUGUGG m7b Disrupted HHKTA_26197_NM_001145374|1063|1102|2.85568410941597|1.26015126100044

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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