SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001557
Gene Symbol: GDF6
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.96144971G>A COSM3395456 8031704 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5090 gcGCCCCGGatgcca CCGGGGCA m7a (m7a->m6a) HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811
hsa-miR-637 gcgCCCCAGatgcca ACUGGGGG m6b Created HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811
hsa-miR-6784-5p gcGCCCCGGatgcca GCCGGGGC m7b (m7b->m6b) HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811
hsa-miR-8089 gcgCCCCAGatgcca CCUGGGGA m6b Created HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811
hsa-miR-1298-3p gcgcCCCAGATGcca CAUCUGGG m8a Created HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811
hsa-miR-4667-5p gcgCCCCAGatgcca ACUGGGGA m6b Created HHHNA_21599_GDF6|NM_001001557|exon_CDS|-3.54253181177249|-0.118576184331811

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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