SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001485
Gene Symbol: ATP2C1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014211AAA>A COSM1683960 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4452 caAATTCAAaaaaaaaa UUGAAUUC m7a (m7a->m6a) HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-129-5p caaattCAAAAAaaaaa CUUUUUGC m6b Disrupted HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014205A>G COSM1419031 TCGA-AZ-6598-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1248 aaaaaAAGAAGGcag ACCUUCUU m7b Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-5581-5p aaaaaaaGAAGGCag AGCCUUCC m6b Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014202G>AG COSM1484617 TCGA-E9-A245-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6738-3p aaaaaaaGGCAGAAg CUUCUGCC m7b Disrupted HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-5001-3p aaaaaaAGGCAGAAg UUCUGCCU m8a Disrupted HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-4727-5p aaaaaaaGGCAGAag AUCUGCCA m6b Disrupted HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014202AG>G COSM111581 TCGA-13-0717-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4727-5p aaaaaaaGGCAGAag AUCUGCCA m6b Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-5001-3p aaaaaaaAGGCAGAAg UUCUGCCU m8a Disrupted HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-6738-3p aaaaaaaGGCAGAAG CUUCUGCC m8a Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014202AAG>G COSM3729907 LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6738-3p aaaaaaaGGCAGAAG CUUCUGCC m8a Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-5001-3p aaaaaaAGGCAGAAg UUCUGCCU m8a Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

Mutation Mutation ID Sample Name Cancer Type
chr3:g.131014202AAAG>G COSM4611442 SNU-C2B [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4727-5p aaaaaaaGGCAGAag AUCUGCCA m6b Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-5001-3p aaaaaaAGGCAGAAg UUCUGCCU m8a Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359
hsa-miR-6738-3p aaaaaaaGGCAGAAG CUUCUGCC m8a Created HHKTA_50343_NM_014065|2297|2336|1.34130617260447|0.352184826821359

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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