SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001001485
Gene Symbol: ATP2C1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.130999628G>A COSM3759755 TCGA-AM-5821-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1237-3p ttCAGAAGGtttttc UCCUUCUG m7b (m7b->m6b) HHFKP_103933_cluster-16155_22_20
hsa-miR-548ac ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548ae-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548ah-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548aj-3p ttcagaaAGTTTTTc UAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548am-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548aq-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548bb-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548d-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548h-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548j-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548x-3p ttcagaaAGTTTTTc UAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548z ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-5582-3p ttcagaAAGTTTTtc UAAAACUU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-1237-3p ttCAGAAGGtttttc UCCUUCUG m7b (m7b->m6b) HHFKP_103933_cluster-16155_22_20
hsa-miR-548ac ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548ae-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548ah-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548aj-3p ttcagaaAGTTTTTc UAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548am-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548aq-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548bb-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548d-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548h-3p ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-548j-3p ttcagaaAGTTTTTc CAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548x-3p ttcagaaAGTTTTTc UAAAAACU m7b Created HHFKP_103933_cluster-16155_22_20
hsa-miR-548z ttcagaaGGTTTTTc CAAAAACC m7b Disrupted HHFKP_103933_cluster-16155_22_20
hsa-miR-5582-3p ttcagaAAGTTTTtc UAAAACUU m7b Created HHFKP_103933_cluster-16155_22_20

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130996746C>T COSM332007 LUAD-B00523 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p tcaatgCTATGCAga UUGCAUAG m7b Created HHFKP_103932_cluster-16155_21_16
hsa-miR-5011-3p tcaatgCCATGCAga GUGCAUGG m7b Disrupted HHFKP_103932_cluster-16155_21_16

Mutation Mutation ID Sample Name Cancer Type
chr3:g.130996736C>T COSM3587463 TCGA-EB-A5UN-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1253 cctaaTCTTCTCaat AGAGAAGA m7b Created HHFKP_103932_cluster-16155_21_16
hsa-miR-3159 ccTAATCCTctcaat UAGGAUUA m7b (m7b->m6b) HHFKP_103932_cluster-16155_21_16
hsa-miR-4699-5p cctAATCTTCTcaat AGAAGAUU m8a Created HHFKP_103932_cluster-16155_21_16
hsa-miR-6770-5p cctaatCTTCTCAat UGAGAAGG m7a Created HHFKP_103932_cluster-16155_21_16
hsa-miR-6859-5p cctaaTCCTCTCaat GAGAGGAA m7a Disrupted HHFKP_103932_cluster-16155_21_16
hsa-miR-1253 cctaaTCTTCTCaat AGAGAAGA m7b Created HHFKP_103932_cluster-16155_21_16
hsa-miR-3159 ccTAATCCTctcaat UAGGAUUA m7b (m7b->m6b) HHFKP_103932_cluster-16155_21_16
hsa-miR-4699-5p cctAATCTTCTcaat AGAAGAUU m8a Created HHFKP_103932_cluster-16155_21_16
hsa-miR-6770-5p cctaatCTTCTCAat UGAGAAGG m7a Created HHFKP_103932_cluster-16155_21_16
hsa-miR-6859-5p cctaaTCCTCTCaat GAGAGGAA m7a Disrupted HHFKP_103932_cluster-16155_21_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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