SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000946
Gene Symbol: PRIM1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.56752298A>G COSM4150261 AOCS-150-3-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273g-3p gcgctCAGTGGagac ACCACUGC m6b Created HPRO6_21006_G24452.1_57146076
hsa-miR-136-5p gcgctcAATGGAGac ACUCCAUU m7b Disrupted HPRO6_21006_G24452.1_57146076
hsa-miR-181a-2-3p gcgcTCAGTGGagac ACCACUGA m7b Created HPRO6_21006_G24452.1_57146076
hsa-miR-6509-3p gcgctCAGTGGAgac UUCCACUG m7b Created HPRO6_21006_G24452.1_57146076

Mutation Mutation ID Sample Name Cancer Type
chr12:g.56752296G>A COSM3463577 TCGA-EE-A29D-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-5p gctcAATGGAGacgt ACUCCAUU m7b Disrupted HPRO6_21006_G24452.1_57146076

Mutation Mutation ID Sample Name Cancer Type
chr12:g.56752285A>C COSM4997965 PDA_004 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7704 acgtttGACCCCacc CGGGGUCG m6b Disrupted HPRO6_21006_G24452.1_57146076
hsa-miR-4472 acgtttgCCCCCACc GGUGGGGG m7b Created HPRO6_21006_G24452.1_57146076
hsa-miR-4697-5p acgtttGCCCCCacc AGGGGGCG m6b Created HPRO6_21006_G24452.1_57146076
hsa-miR-4488 acgtttGCCCCCacc AGGGGGCG m6b Created HPRO6_21006_G24452.1_57146076
hsa-miR-4470 acGTTTGCCcccacc UGGCAAAC m7b (m6b->m7b) HPRO6_21006_G24452.1_57146076
hsa-miR-4447 acgtttgCCCCCACc GGUGGGGG m7b Created HPRO6_21006_G24452.1_57146076
hsa-miR-1237-5p acgtttGCCCCCacc CGGGGGCG m6b Created HPRO6_21006_G24452.1_57146076
hsa-miR-6742-5p acgtttgACCCCACc AGUGGGGU m7b Disrupted HPRO6_21006_G24452.1_57146076
hsa-miR-615-5p acgtttGACCCCacc GGGGGUCC m6b Disrupted HPRO6_21006_G24452.1_57146076

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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