SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_000946
Gene Symbol: PRIM1
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.56752285A>C COSM4997965 PDA_004 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6742-5p acgtttgACCCCACc AGUGGGGU m7b Disrupted HHFKP_32195_cluster-5600_4_12
hsa-miR-7704 acgtttGACCCCacc CGGGGUCG m6b Disrupted HHFKP_32195_cluster-5600_4_12
hsa-miR-1237-5p acgtttGCCCCCacc CGGGGGCG m6b Created HHFKP_32195_cluster-5600_4_12
hsa-miR-4447 acgtttgCCCCCACc GGUGGGGG m7b Created HHFKP_32195_cluster-5600_4_12
hsa-miR-4470 acGTTTGCCcccacc UGGCAAAC m7b (m6b->m7b) HHFKP_32195_cluster-5600_4_12
hsa-miR-4472 acgtttgCCCCCACc GGUGGGGG m7b Created HHFKP_32195_cluster-5600_4_12
hsa-miR-4488 acgtttGCCCCCacc AGGGGGCG m6b Created HHFKP_32195_cluster-5600_4_12
hsa-miR-4697-5p acgtttGCCCCCacc AGGGGGCG m6b Created HHFKP_32195_cluster-5600_4_12
hsa-miR-615-5p acgtttGACCCCacc GGGGGUCC m6b Disrupted HHFKP_32195_cluster-5600_4_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser