SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000938
Gene Symbol: POLR2B
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.57006930A>T COSM4917016 TCGA-ED-A7PZ-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295a atGGCCTAAaatact UUAGGCCG m7a (m7a->m6a) HPRO6_57128_G68070.1_57873091
hsa-miR-4477b atggCCTTAAatact AUUAAGGA m6b Created HPRO6_57128_G68070.1_57873091
hsa-miR-4717-5p aTGGCCTAaaatact UAGGCCAC m7a Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-5704 aTGGCCTAAaatact UUAGGCCA m8a (m8a->m7a) HPRO6_57128_G68070.1_57873091
hsa-miR-7856-5p atggCCTTAAAtact UUUUAAGG m7b Created HPRO6_57128_G68070.1_57873091

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57006925G>T COSM587840 TCGA-38-4629-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1295a atctgatGGCCTAAa UUAGGCCG m7a Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-15a-3p atctgATGGCCTaaa CAGGCCAU m7b Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-4423-3p atctgatTGCCTAaa AUAGGCAC m6b Created HPRO6_57128_G68070.1_57873091
hsa-miR-4529-5p atctGATGGCCTaaa AGGCCAUC m8a Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-4717-5p atctgaTGGCCTAaa UAGGCCAC m7a Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-5704 atctgaTGGCCTAAa UUAGGCCA m8a Disrupted HPRO6_57128_G68070.1_57873091

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57006920C>G COSM587841 TCGA-50-6590-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5580-3p atCATATGTGatggc CACAUAUG m8a Created HPRO6_57128_G68070.1_57873091
hsa-miR-6884-3p atcatatGTGATGGc CCCAUCAC m7b Created HPRO6_57128_G68070.1_57873091

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57006916A>G COSM3767921 RK197_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-640 acGGATCATatctga AUGAUCCA m7a (m7a->m6a) HPRO6_57128_G68070.1_57873091

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57006915C>T COSM4464068 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4454 caCGGATCatatctg GGAUCCGA m6b Disrupted HPRO6_57128_G68070.1_57873091
hsa-miR-640 cacGGATCATatctg AUGAUCCA m7a Disrupted HPRO6_57128_G68070.1_57873091

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999658T>C COSM4799187 BCM337T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-1-3p tggCAACTCTaccat AGAGUUGA m7a Disrupted HPRO6_57126_G68068.1_57865839
hsa-miR-296-3p tggCAACCCTaccat GAGGGUUG m7b Created HPRO6_57126_G68068.1_57865839
hsa-miR-3529-5p tggcaacTCTACCat AGGUAGAC m6b Disrupted HPRO6_57126_G68068.1_57865839
hsa-miR-4451 tggcaaCTCTACCAt UGGUAGAG m8a Disrupted HPRO6_57126_G68068.1_57865839
hsa-miR-4650-3p tggcaacTCTACCat AGGUAGAA m6b Disrupted HPRO6_57126_G68068.1_57865839
hsa-miR-6501-5p TGGCAACTctaccat AGUUGCCA m8a Disrupted HPRO6_57126_G68068.1_57865839

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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