SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000938
Gene Symbol: POLR2B
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030975T>C COSM326212 585276 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1298-5p ccgCGAATGAtgagt UUCAUUCG m7b Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-382-3p ccgcGAATGATgagt AAUCAUUC m7b Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030970G>A COSM276838 T2944 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3677-3p ttgcaCCACGAatga CUCGUGGG m6b Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-4746-3p ttGCACCGCgaatga AGCGGUGC m7b (m7b->m6b) HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-579-5p ttgcACCGCGAatga UCGCGGUU m7a Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030968C>T COSM4125336 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4746-3p tattGCACCGCgaat AGCGGUGC m7b Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-579-5p tattgcACCGCGAat UCGCGGUU m7a Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030966C>T COSM4125335 TCGA-BR-8361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-338-5p agTATTGTaccgcga AACAAUAU m6b Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-4746-3p agtattGCACCGCga AGCGGUGC m7b Disrupted HHRBL_10711_BCBL1-2of3-SCL_3985

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030960G>T COSM1056384 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-154-3p tcTATGATTattgca AAUCAUAC m7a (m6a->m7a) HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-376a-3p TCTATGATtattgca AUCAUAGA m8a Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-376b-3p TCTATGATtattgca AUCAUAGA m8a Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-487a-3p tcTATGATTattgca AAUCAUAC m7a (m6a->m7a) HHRBL_10711_BCBL1-2of3-SCL_3985

Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030923G>A COSM1221503 CPCG0094-F1 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3607-5p gccttaCACATGCaa GCAUGUGA m7a Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-4666b gccttacACATGCAa UUGCAUGU m7b Created HHRBL_10711_BCBL1-2of3-SCL_3985
hsa-miR-511-3p gcctTACACATgcaa AAUGUGUA m7b Created HHRBL_10711_BCBL1-2of3-SCL_3985
Mutation Mutation ID Sample Name Cancer Type
chr4:g.57030922C>G COSM734033 TCGA-22-5492-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999700C>T COSM4509835 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-5p ttgtgttTAGAGCat CGCUCUAG m6b Created HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-146a-3p ttgtgTTCAGAGcat CCUCUGAA m7b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-301a-5p ttgtgtTCAGAGCat GCUCUGAC m7a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-301b-5p ttgtgtTCAGAGCat GCUCUGAC m7a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-3194-3p ttgtgttCAGAGCat AGCUCUGC m6b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-4539 ttgtGTTCAGagcat GCUGAACU m6b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-520f-5p ttgtgTTTAGAGcat CCUCUAAA m7b Created HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-5691 ttgtgttCAGAGCAt UUGCUCUG m7b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-6502-5p ttgtgttTAGAGCat AGCUCUAG m6b Created HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-6805-3p ttgtgttCAGAGCAt UUGCUCUG m7b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999691T>C COSM4125330 TCGA-BR-8487-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1272 cCATCATCattgtgt GAUGAUGA m7a Created HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-1322 cCATCATCattgtgt GAUGAUGC m7a Created HHRBL_10708_BCBL1-2of3-SCL_3388

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999677G>T COSM1056367 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-137 caAGCAATAAgttcc UUAUUGCU m8a Created HHRBL_10708_BCBL1-2of3-SCL_3388

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999658T>C COSM4799187 BCM337T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-1-3p tggCAACTCTaccat AGAGUUGA m7a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-296-3p tggCAACCCTaccat GAGGGUUG m7b Created HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-3529-5p tggcaacTCTACCat AGGUAGAC m6b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-4451 tggcaaCTCTACCAt UGGUAGAG m8a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-4650-3p tggcaacTCTACCat AGGUAGAA m6b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388
hsa-miR-6501-5p TGGCAACTctaccat AGUUGCCA m8a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999644C>T COSM3302319 LS180 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6825-3p tgGTCAGCGCattgt GCGCUGAC m8a Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388

Mutation Mutation ID Sample Name Cancer Type
chr4:g.56999639G>T COSM3604683 TCGA-D3-A5GO-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6825-3p gctattgGTCAGCGc GCGCUGAC m7b Disrupted HHRBL_10708_BCBL1-2of3-SCL_3388

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser