SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000927
Gene Symbol: ABCB1
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.87570209A>G COSM1092639 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-10b-5p caatgatACAGGGTt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-10a-5p caatgatACAGGGTt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525

Mutation Mutation ID Sample Name Cancer Type
chr7:g.87570206G>T COSM1550432 TCGA-78-7158-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6732-3p tgataCAGGGTTctt UAACCCUG m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-10a-5p tgatACAGGGTtctt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-10b-5p tgatACAGGGTtctt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525

Mutation Mutation ID Sample Name Cancer Type
chr7:g.87570206G>C COSM1187346 LC_C4 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-10b-5p tgatACAGGGTtctt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-6732-3p tgataCAGGGTTctt UAACCCUG m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-10a-5p tgatACAGGGTtctt UACCCUGU m7b Disrupted HPRO6_72342_G86412.1_87199525

Mutation Mutation ID Sample Name Cancer Type
chr7:g.87570202T>A COSM1550433 TCGA-55-6969-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3185 acagggTTCTTCatg AGAAGAAG m6b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-4511 acaggGTTCTTCatg GAAGAACU m7a Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-548ao-5p acagggTACTTCatg AGAAGUAA m6b Created HPRO6_72342_G86412.1_87199525
hsa-miR-548ax acagggTACTTCatg AGAAGUAA m6b Created HPRO6_72342_G86412.1_87199525
hsa-miR-548b-3p acagGGTTCTTcatg CAAGAACC m7b Disrupted HPRO6_72342_G86412.1_87199525
hsa-miR-5585-5p acaggGTACTTCAtg UGAAGUAC m8a Created HPRO6_72342_G86412.1_87199525
hsa-miR-6732-3p aCAGGGTTcttcatg UAACCCUG m7b Disrupted HPRO6_72342_G86412.1_87199525

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser