SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000895
Gene Symbol: LTA4H
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.96027510T>C COSM4857807 TCGA-B0-4823-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1249-5p cttctgCCCTCCagt AGGAGGGA m6b Created HPRO6_21459_G24979.1_96421301
hsa-miR-2278 cttCTGCTCTCcagt GAGAGCAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-298 CTTCTGCTctccagt AGCAGAAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-3616-3p cttcTGCCCTCcagt CGAGGGCA m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-4436b-3p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-4468 ctTCTGCTCTccagt AGAGCAGA m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-4632-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HPRO6_21459_G24979.1_96421301
hsa-miR-5192 cttctgCTCTCCagt AGGAGAGU m6b Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-6515-5p cttctgCCCTCCAgt UUGGAGGG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6735-5p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6797-5p cttctgCCCTCCagt AGGAGGGA m6b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6879-5p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-7843-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HPRO6_21459_G24979.1_96421301
hsa-miR-1249-5p cttctgCCCTCCagt AGGAGGGA m6b Created HPRO6_21459_G24979.1_96421301
hsa-miR-2278 cttCTGCTCTCcagt GAGAGCAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-298 CTTCTGCTctccagt AGCAGAAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-3616-3p cttcTGCCCTCcagt CGAGGGCA m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-4436b-3p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-4468 ctTCTGCTCTccagt AGAGCAGA m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-4632-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HPRO6_21459_G24979.1_96421301
hsa-miR-5192 cttctgCTCTCCagt AGGAGAGU m6b Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-6515-5p cttctgCCCTCCAgt UUGGAGGG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6735-5p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6797-5p cttctgCCCTCCagt AGGAGGGA m6b Created HPRO6_21459_G24979.1_96421301
hsa-miR-6879-5p cttCTGCCCTccagt CAGGGCAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-7843-5p cttCTGCCCTCcagt GAGGGCAG m8a Created HPRO6_21459_G24979.1_96421301

Mutation Mutation ID Sample Name Cancer Type
chr12:g.96027507C>T COSM3872742 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-2-3p ctgctctTCAGTGGc ACCACUGA m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-2278 CTGCTCTCcagtggc GAGAGCAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-4709-3p ctgCTCTTCAgtggc UUGAAGAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-5192 ctgCTCTCCagtggc AGGAGAGU m6b Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-181a-2-3p ctgctctTCAGTGGc ACCACUGA m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-2278 CTGCTCTCcagtggc GAGAGCAG m8a Disrupted HPRO6_21459_G24979.1_96421301
hsa-miR-4709-3p ctgCTCTTCAgtggc UUGAAGAG m7b Created HPRO6_21459_G24979.1_96421301
hsa-miR-5192 ctgCTCTCCagtggc AGGAGAGU m6b Disrupted HPRO6_21459_G24979.1_96421301

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser