SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000885
Gene Symbol: ITGA4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.181478774G>A COSM3574742 TCGA-DA-A1I5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4684-5p aaaattTAGAGAaaa CUCUCUAC m6b Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-4768-5p aaaatttAGAGAAaa AUUCUCUC m6b Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-4799-5p aaaATTTAGAgaaaa AUCUAAAU m7b Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-515-5p aaaatTTGGAGAAaa UUCUCCAA m8a Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-519d-5p aaaaTTTGGAGaaaa CCUCCAAA m7b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-519e-5p aaaatTTGGAGAAaa UUCUCCAA m8a Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-520f-5p aaaaTTTAGAGaaaa CCUCUAAA m7b Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-5695 aaaatTTGGAGaaaa ACUCCAAG m6b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-629-3p aaaatttGGAGAAaa GUUCUCCC m6b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-6809-3p aaaatttAGAGAAaa CUUCUCUU m6b Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-6833-3p aaaatttAGAGAAAa UUUCUCUC m7a Created HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181478773T>C COSM3743453 RK081_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-515-5p aaaaatTTGGAGAAa UUCUCCAA m8a Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-519d-5p aaaaaTTTGGAGaaa CCUCCAAA m7b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-519e-5p aaaaatTTGGAGAAa UUCUCCAA m8a Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154
hsa-miR-5695 aaaaatTTGGAGaaa ACUCCAAG m6b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181478771T>A COSM4089399 TCGA-CD-5798-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519d-5p gaaaaaaTTTGGAGa CCUCCAAA m7b Disrupted HHHNE_8930_ITGA4|NM_000885|exon_CDS|-5.97273441518574|-1.18166332015154

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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