SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000885
Gene Symbol: ITGA4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.181475049G>A COSM1306194 TCGA-DK-A1A6-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7152-5p gcCAGGAAAaaatgg UUUCCUGU m7a (m6a->m7a) HHFKP_84635_cluster-13267_1_8
hsa-miR-1250-3p gccaggaGAAAATGg ACAUUUUC m7b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-153-5p gccaggaAAAAATGg UCAUUUUU m7b Created HHFKP_84635_cluster-13267_1_8
hsa-miR-1976 gcCAGGAGaaaatgg CCUCCUGC m6b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-3653-5p gcCAGGAGaaaatgg CCUCCUGA m6b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-4279 gccAGGAGAaaatgg CUCUCCUC m6b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-629-3p gccaGGAGAAaatgg GUUCUCCC m6b Disrupted HHFKP_84635_cluster-13267_1_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.181475035C>T COSM3574737 TCGA-EE-A29A-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-875-3p acacTTTCCAGacag CCUGGAAA m7b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-1299 acactTTCCAGAcag UUCUGGAA m7b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-3978 acaCTTTCCAgacag GUGGAAAG m7b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-1231 acactttCCAGACAg GUGUCUGG m7b Disrupted HHFKP_84635_cluster-13267_1_8
hsa-miR-6128 acactTTCCAGacag ACUGGAAU m6b Disrupted HHFKP_84635_cluster-13267_1_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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