SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000831
Gene Symbol: GRIK3
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.36891049G>A COSM4007549 TCGA-CG-5733-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4304 catgaATGCCGagga CCGGCAUG m6b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4798-5p catgaATACCGAgga UUCGGUAU m7b Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-8088 catgaaTACCGAGGa CCUCGGUA m8a Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4304 catgaATGCCGagga CCGGCAUG m6b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4798-5p catgaATACCGAgga UUCGGUAU m7b Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-8088 catgaaTACCGAGGa CCUCGGUA m8a Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612

Mutation Mutation ID Sample Name Cancer Type
chr1:g.36891048C>A COSM347960 LUAD-VUMN6 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4304 atgaATGCCGaggag CCGGCAUG m6b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612

Mutation Mutation ID Sample Name Cancer Type
chr1:g.36891043G>A COSM4752981 pfg144T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-2-5p tgccgAGAAGCatgc AGCUUCUU m6b Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4268 tgccGAGGAGCatgc GGCUCCUC m7b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4448 tgccgAGGAGCatgc GGCUCCUU m6b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-6772-3p tgccgAGGAGCAtgc UUGCUCCU m7b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-103a-2-5p tgccgAGAAGCatgc AGCUUCUU m6b Created HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4268 tgccGAGGAGCatgc GGCUCCUC m7b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-4448 tgccgAGGAGCatgc GGCUCCUU m6b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-6772-3p tgccgAGGAGCAtgc UUGCUCCU m7b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612

Mutation Mutation ID Sample Name Cancer Type
chr1:g.36891040C>A COSM1502681 TCGA-95-7043-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4268 cGAGGAGCatgcctt GGCUCCUC m7b Disrupted HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612
hsa-miR-6772-3p cgAGGAGCAtgcctt UUGCUCCU m7b (m7b->m6b) HHHNE_7418_GRIK3|NM_000831|exon_CDS|-2.12841558045716|0.895988212071612

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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