SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000757
Gene Symbol: CSF1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.109924159G>A COSM3471015 TCGA-IH-A3EA-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3142 gccgtcgAAGGCCTc AAGGCCUU m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-1245b-5p gccgtcgAAGGCCTc UAGGCCUU m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-3142 gccgtcgAAGGCCTc AAGGCCUU m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-1245b-5p gccgtcgAAGGCCTc UAGGCCUU m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185

Mutation Mutation ID Sample Name Cancer Type
chr1:g.109924150T>A COSM4172112 2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7107-5p gtcttgCAGGCCGtc UCGGCCUG m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-4696 GTCTTGCAggccgtc UGCAAGAC m8a Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-451b gTCTTGCTggccgtc UAGCAAGA m7b Disrupted HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-2276-3p gtCTTGCAGgccgtc UCUGCAAG m7b (m6b->m7b) HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-1234-3p gtcttgCAGGCCGtc UCGGCCUG m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-4696 GTCTTGCAggccgtc UGCAAGAC m8a Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-451b gTCTTGCTggccgtc UAGCAAGA m7b Disrupted HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-2276-3p gtCTTGCAGgccgtc UCUGCAAG m7b (m6b->m7b) HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-1234-3p gtcttgCAGGCCGtc UCGGCCUG m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185
hsa-miR-7107-5p gtcttgCAGGCCGtc UCGGCCUG m7b Created HHHNE_4266_CSF1|NM_000757|exon_CDS|-3.64178919067194|-1.54141239266185

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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