SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000745
Gene Symbol: CHRNA5
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.78590189T>G COSM1608726 HCC84T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3662 tcTCATTTTtaactg GAAAAUGA m7b (m7b->m6b) HPRT3_9195_G12097.1_78882525
hsa-miR-548c-3p tctcATTTTTaactg CAAAAAUC m6b Disrupted HPRT3_9195_G12097.1_78882525

Mutation Mutation ID Sample Name Cancer Type
chr15:g.78590181C>T COSM965391 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-589-5p tattgGGTTCTCAtt UGAGAACC m8a Created HPRT3_9195_G12097.1_78882525
hsa-miR-4712-3p tattgggCTCTCATt AAUGAGAG m7b Disrupted HPRT3_9195_G12097.1_78882525

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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