SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000551
Gene Symbol: VHL
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.10151991T>C COSN2535402
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-5p ttaggAACTGGAggc GUCCAGUU m7b Created HHHNE_20641_VHL|NM_198156|exon_utr3|-6.52836087231328|-0.27865004031199
hsa-miR-584-3p ttaGGAACTGgaggc UCAGUUCC m7b Created HHHNE_20641_VHL|NM_198156|exon_utr3|-6.52836087231328|-0.27865004031199
hsa-miR-5195-3p ttaggAACTGGAggc AUCCAGUU m7b Created HHHNE_20641_VHL|NM_198156|exon_utr3|-6.52836087231328|-0.27865004031199
hsa-miR-3925-3p ttaggaACTGGAGgc ACUCCAGU m7b Created HHHNE_20641_VHL|NM_198156|exon_utr3|-6.52836087231328|-0.27865004031199

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141904C>T COSM1417281 2146347 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4763-5p aGGCAGGCGtcgaag CGCCUGCC m8a (m8a->m7a) HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141904C>A COSM14364 972746 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6747-3p AGGCAGGAgtcgaag UCCUGCCU m8a Created HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202
hsa-miR-4431 aggcagGAGTCGaag GCGACUCU m6b Created HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202
hsa-miR-1976 agGCAGGAGtcgaag CCUCCUGC m7b (m6b->m7b) HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202
hsa-miR-4763-5p aGGCAGGCGtcgaag CGCCUGCC m8a (m8a->m7a) HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141888G>GA COSM17851 979560 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-937-3p gaggtagGCGCGGAg AUCCGCGC m7b Disrupted HHHNE_20640_VHL|NM_000551|exon_CDS|-6.53089129561489|0.1116536576202

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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