SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000551
Gene Symbol: VHL
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141853C>T COSM3727790 2161810 [kidney][NS][carcinoma][rhabdoid_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5090 gaaTGCCCCGGaggg CCGGGGCA m8a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6775-5p gaaTGCCCCGgaggg UCGGGGCA m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6784-5p gaatGCCCCGGaggg GCCGGGGC m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141850G>A COSM14367 980521 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-503-3p agggAATACCCCgga GGGGUAUU m8a Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-5090 agggaaTGCCCCGGa CCGGGGCA m8a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6775-5p agggaaTGCCCCGga UCGGGGCA m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6784-5p agggaatGCCCCGGa GCCGGGGC m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141845G>A COSM3727792 2146324 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1470 cgCGGAGGGaatgcc GCCCUCCG m7b (m7b->m6b) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-3938 cgcggAGGGAATgcc AAUUCCCU m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4667-3p cgcGGAGGGAatgcc UCCCUCCU m7a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4768-5p cgcgGAGAGAATgcc AUUCUCUC m8a Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-642a-5p cgcgGAGGGAatgcc GUCCCUCU m6b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6833-3p cgcgGAGAGAAtgcc UUUCUCUC m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6845-3p cgcGGAGAGaatgcc CCUCUCCU m6b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141838C>T COSM18001 5103 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141837T>C COSM18007 U1 [urinary_tract][renal_pelvis][carcinoma][transitional_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-198 gTCTGGACCgcggag GGUCCAGA m8a (m7a->m8a) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141834G>A COSM18394 13GT [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4305 gtgGTCTAGatcgcg CCUAGACA m6b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141828T>G COSN14664970 8068585 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5587-3p gCCCGGGGggtctgg GCCCCGGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6840-5p gcCCGGGGGgtctgg ACCCCCGG m7b (m6b->m7b) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6859-3p gcccgGGGGGTCtgg UGACCCCC m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141826G>A COSM18002 5466 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3181 cGGCCCGAgtggtct AUCGGGCC m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141822C>T COSM3727794 2146322 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4743-5p cgTCCGGCCcgggtg UGGCCGGA m7b (m7b->m6b) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6781-5p cgtCCGGCCCGggtg CGGGCCGG m8a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141820G>A COSM1684703 2009953 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3652 ggcgTCCAGCCcggg CGGCUGGA m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4430 ggcgTCCAGCCcggg AGGCUGGA m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4492 ggcgtCCAGCCCggg GGGGCUGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4498 ggcgtCCAGCCCggg UGGGCUGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4743-5p ggcgTCCGGCCcggg UGGCCGGA m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-5001-5p ggcgtCCAGCCCggg AGGGCUGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6781-5p ggcgtCCGGCCCGgg CGGGCCGG m8a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-762 ggcgtCCAGCCCggg GGGGCUGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141819C>T COSM18003 5694 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4640-5p cggcgtCTGGCCCgg UGGGCCAG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4726-5p cggcgtCTGGCCCgg AGGGCCAG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4743-5p cggcgTCCGGCCcgg UGGCCGGA m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6781-5p cggcgtCCGGCCCGg CGGGCCGG m8a Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141818C>T COSM3727793 2146322 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4743-5p gcggcgTCCGGCCcg UGGCCGGA m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6781-5p gcggcgtCCGGCCCg CGGGCCGG m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6877-5p gcggcgtTCGGCCCg AGGGCCGA m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141811G>A COSM18392 8VT [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3648 ggatcCCGCGGCgtc AGCCGCGG m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-450b-3p gGATCCCAcggcgtc UUGGGAUC m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4654 ggATCCCACggcgtc UGUGGGAU m7b (m6b->m7b) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4713-3p GGATCCCAcggcgtc UGGGAUCC m8a Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4769-5p ggATCCCACggcgtc GGUGGGAU m7b (m6b->m7b) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-769-3p gGATCCCAcggcgtc CUGGGAUC m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

Mutation Mutation ID Sample Name Cancer Type
chr3:g.10141810C>T COSM18334 982068 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3648 cggatcCCGCGGCgt AGCCGCGG m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4661-3p cGGATCCTGcggcgt CAGGAUCC m8a (m7a->m8a) HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-4713-3p cGGATCCCgcggcgt UGGGAUCC m7b Disrupted HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431
hsa-miR-6886-5p cggatCCTGCGGcgt CCCGCAGG m7b Created HHHNA_16030_VHL|NM_000551|exon_utr5|-5.35515260348039|0.203771184684431

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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