SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000544
Gene Symbol: TAP2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.32838140C>T COSM461802 TCGA-FU-A23K-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1224-5p tttgctTCCTCAagg GUGAGGAC m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3915 tttgcTTCCTCAAgg UUGAGGAA m8a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3928-3p tttgcTTCCTCaagg GGAGGAAC m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-539-5p tttgcTTTCTCaagg GGAGAAAU m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6828-5p ttTGCTTCCTcaagg AGGAAGCA m8a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6858-5p tttgctTCCTCAagg GUGAGGAG m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-1224-5p tttgctTCCTCAagg GUGAGGAC m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3915 tttgcTTCCTCAAgg UUGAGGAA m8a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3928-3p tttgcTTCCTCaagg GGAGGAAC m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-539-5p tttgcTTTCTCaagg GGAGAAAU m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6828-5p ttTGCTTCCTcaagg AGGAAGCA m8a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6858-5p tttgctTCCTCAagg GUGAGGAG m6b Disrupted HPRO6_67848_G80978.1_32805907

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32838129G>T COSM4440080 Patient_1:_post-everolimus [thyroid][NS][carcinoma][anaplastic_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-1-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-129-2-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-221-5p aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3690 aagggctTCCAGGac ACCUGGAC m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4254 aagggctTCCAGGac GCCUGGAG m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4720-5p aagggcTGCCAGGac CCUGGCAU m7a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6079 aaggGCTTCCAggac UUGGAAGC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-671-5p aagGGCTTCCaggac AGGAAGCC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6828-5p aaggGCTTCCaggac AGGAAGCA m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6868-5p aagggCTGCCAGgac ACUGGCAG m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-8073 aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-875-3p aagggcTTCCAGGac CCUGGAAA m7a Created HPRO6_67848_G80978.1_32805907
hsa-miR-885-3p aaggGCTGCCaggac AGGCAGCG m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-129-1-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-129-2-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-221-5p aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3690 aagggctTCCAGGac ACCUGGAC m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4254 aagggctTCCAGGac GCCUGGAG m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4720-5p aagggcTGCCAGGac CCUGGCAU m7a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6079 aaggGCTTCCAggac UUGGAAGC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-671-5p aagGGCTTCCaggac AGGAAGCC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6828-5p aaggGCTTCCaggac AGGAAGCA m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6868-5p aagggCTGCCAGgac ACUGGCAG m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-8073 aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-875-3p aagggcTTCCAGGac CCUGGAAA m7a Created HPRO6_67848_G80978.1_32805907
hsa-miR-885-3p aaggGCTGCCaggac AGGCAGCG m6b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-129-1-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-129-2-3p AAGGGCTTccaggac AAGCCCUU m8a Created HPRO6_67848_G80978.1_32805907
hsa-miR-221-5p aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-3690 aagggctTCCAGGac ACCUGGAC m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4254 aagggctTCCAGGac GCCUGGAG m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-4720-5p aagggcTGCCAGGac CCUGGCAU m7a Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6079 aaggGCTTCCAggac UUGGAAGC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-671-5p aagGGCTTCCaggac AGGAAGCC m7b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6828-5p aaggGCTTCCaggac AGGAAGCA m6b Created HPRO6_67848_G80978.1_32805907
hsa-miR-6868-5p aagggCTGCCAGgac ACUGGCAG m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-8073 aagggcTGCCAGGac ACCUGGCA m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-875-3p aagggcTTCCAGGac CCUGGAAA m7a Created HPRO6_67848_G80978.1_32805907
hsa-miR-885-3p aaggGCTGCCaggac AGGCAGCG m6b Disrupted HPRO6_67848_G80978.1_32805907

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32838122C>T COSM483911 TCGA-CJ-5686-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4540 gccAGGACTAtggct UUAGUCCU m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6838-3p gcCAGGACTatggct AAGUCCUG m7b (m7b->m6b) HPRO6_67848_G80978.1_32805907
hsa-miR-4540 gccAGGACTAtggct UUAGUCCU m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6838-3p gcCAGGACTatggct AAGUCCUG m7b (m7b->m6b) HPRO6_67848_G80978.1_32805907
hsa-miR-4540 gccAGGACTAtggct UUAGUCCU m7b Disrupted HPRO6_67848_G80978.1_32805907
hsa-miR-6838-3p gcCAGGACTatggct AAGUCCUG m7b (m7b->m6b) HPRO6_67848_G80978.1_32805907

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32837559A>G COSM4878877 TCGA-KK-A59V-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5589-3p cttcttCATGTGCct UGCACAUG m7b Disrupted HPRO6_67847_G80977.1_32805334
hsa-miR-8060 cttCTTCATGtgcct CCAUGAAG m7b Disrupted HPRO6_67847_G80977.1_32805334
hsa-miR-5589-3p cttcttCATGTGCct UGCACAUG m7b Disrupted HPRO6_67847_G80977.1_32805334
hsa-miR-8060 cttCTTCATGtgcct CCAUGAAG m7b Disrupted HPRO6_67847_G80977.1_32805334
hsa-miR-5589-3p cttcttCATGTGCct UGCACAUG m7b Disrupted HPRO6_67847_G80977.1_32805334
hsa-miR-8060 cttCTTCATGtgcct CCAUGAAG m7b Disrupted HPRO6_67847_G80977.1_32805334

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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