SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000538
Gene Symbol: RFXAP
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.36827851T>C COSN5337622 RK156_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5095 atGCCTGTAgaacat UUACAGGC m7b (m7b->m6b) HHFKP_40855_uc001uvu.1_2_29
hsa-miR-544a atgccTGCAGAAcat AUUCUGCA m7b Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-4514 aTGCCTGTagaacat ACAGGCAG m7a Disrupted HHFKP_40855_uc001uvu.1_2_29
hsa-miR-6511b-5p atGCCTGCAGaacat CUGCAGGC m8a Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-6715b-5p aTGCCTGTagaacat ACAGGCAC m7a Disrupted HHFKP_40855_uc001uvu.1_2_29
hsa-miR-6811-5p atGCCTGCAgaacat AUGCAGGC m7b (m6b->m7b) HHFKP_40855_uc001uvu.1_2_29
hsa-miR-7151-3p atGCCTGTAGaacat CUACAGGC m8a Disrupted HHFKP_40855_uc001uvu.1_2_29
hsa-miR-1205 atgCCTGCAGAacat UCUGCAGG m8a Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-139-5p atgcCTGTAGAacat UCUACAGU m7a Disrupted HHFKP_40855_uc001uvu.1_2_29
hsa-miR-17-3p atgcCTGCAGaacat ACUGCAGU m6b Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-1184 atgcCTGCAGaacat CCUGCAGC m6b Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-3158-5p atgcCTGCAGaacat CCUGCAGA m6b Created HHFKP_40855_uc001uvu.1_2_29
hsa-miR-4438 atGCCTGTagaacat CACAGGCU m6b Disrupted HHFKP_40855_uc001uvu.1_2_29

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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