SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000523
Gene Symbol: HOXD13

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.176094609A>G COSM4086918 TCGA-BR-8680-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-938 aacAAGGGCAagcgg UGCCCUUA m7a Created HPTK7_4326_G6301.1_176959338
hsa-miR-874-3p aacaAGGGCAagcgg CUGCCCUG m6b Created HPTK7_4326_G6301.1_176959338
hsa-miR-6886-3p aacAAGGGCAagcgg UGCCCUUC m7a Created HPTK7_4326_G6301.1_176959338
hsa-miR-6780b-3p aACAAGGGcaagcgg UCCCUUGU m7b Created HPTK7_4326_G6301.1_176959338
hsa-miR-676-3p aacaAGGACAagcgg CUGUCCUA m6b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-938 aacAAGGGCAagcgg UGCCCUUA m7a Created HPTK7_4326_G6301.1_176959338
hsa-miR-874-3p aacaAGGGCAagcgg CUGCCCUG m6b Created HPTK7_4326_G6301.1_176959338
hsa-miR-6886-3p aacAAGGGCAagcgg UGCCCUUC m7a Created HPTK7_4326_G6301.1_176959338
hsa-miR-6780b-3p aACAAGGGcaagcgg UCCCUUGU m7b Created HPTK7_4326_G6301.1_176959338
hsa-miR-676-3p aacaAGGACAagcgg CUGUCCUA m6b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-3157-3p aacaAGGGCAagcgg CUGCCCUA m6b Created HPTK7_4326_G6301.1_176959338
hsa-miR-2355-3p aacaAGGACAAgcgg AUUGUCCU m7b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-2355-3p aacaAGGACAAgcgg AUUGUCCU m7b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-3157-3p aacaAGGGCAagcgg CUGCCCUA m6b Created HPTK7_4326_G6301.1_176959338

Mutation Mutation ID Sample Name Cancer Type
chr2:g.176094607G>T COSM1317076 186-01-6TD [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2355-3p ttaacaAGGACAAgc AUUGUCCU m7b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-676-3p ttaacaAGGACAagc CUGUCCUA m6b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-616-3p ttaaCAATGACaagc AGUCAUUG m7b Created HPTK7_4326_G6301.1_176959338
hsa-miR-4289 ttaACAATGacaagc GCAUUGUG m6b Created HPTK7_4326_G6301.1_176959338
hsa-miR-2355-3p ttaacaAGGACAAgc AUUGUCCU m7b Disrupted HPTK7_4326_G6301.1_176959338
hsa-miR-4289 ttaACAATGacaagc GCAUUGUG m6b Created HPTK7_4326_G6301.1_176959338
hsa-miR-616-3p ttaaCAATGACaagc AGUCAUUG m7b Created HPTK7_4326_G6301.1_176959338
hsa-miR-676-3p ttaacaAGGACAagc CUGUCCUA m6b Disrupted HPTK7_4326_G6301.1_176959338

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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