SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

Transcript ID:	NM_000523
Gene Symbol:	HOXD13

Somatic mutations that impact miRNA target sites

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176095817A>G		COSN6155608	RK202_C01	[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094623A>G		COSM212277	SA214	[breast][NS][carcinoma][basal_(triple-negative)_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094617C>T		COSM4444752	C91	[large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-122-3p	caagcggTGGCGTat	AACGCCAU	m6b	Created	HPRO6_44358_G52463.1_176959352
hsa-miR-122-3p	caagcggTGGCGTat	AACGCCAU	m6b	Created	HPRO6_44358_G52463.1_176959352

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094614C>T		COSM4691035	T578	[large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-6500-3p	ggACAAGTGgcggcg	ACACUUGU	m7b	(m6b->m7b)	HPRO6_44358_G52463.1_176959352
hsa-miR-6500-3p	ggACAAGTGgcggcg	ACACUUGU	m7b	(m6b->m7b)	HPRO6_44358_G52463.1_176959352

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094609A>G		COSM4086918	TCGA-BR-8680-01	[stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-2355-3p	aacaAGGACAAgcgg	AUUGUCCU	m7b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-3157-3p	aacaAGGGCAagcgg	CUGCCCUA	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-676-3p	aacaAGGACAagcgg	CUGUCCUA	m6b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-6780b-3p	aACAAGGGcaagcgg	UCCCUUGU	m7b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-6886-3p	aacAAGGGCAagcgg	UGCCCUUC	m7a	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-874-3p	aacaAGGGCAagcgg	CUGCCCUG	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-938	aacAAGGGCAagcgg	UGCCCUUA	m7a	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-2355-3p	aacaAGGACAAgcgg	AUUGUCCU	m7b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-3157-3p	aacaAGGGCAagcgg	CUGCCCUA	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-676-3p	aacaAGGACAagcgg	CUGUCCUA	m6b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-6780b-3p	aACAAGGGcaagcgg	UCCCUUGU	m7b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-6886-3p	aacAAGGGCAagcgg	UGCCCUUC	m7a	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-874-3p	aacaAGGGCAagcgg	CUGCCCUG	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-938	aacAAGGGCAagcgg	UGCCCUUA	m7a	Created	HPRO6_44357_G52462.1_176959339

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094607G>T		COSM1317076	186-01-6TD	[haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-2355-3p	ttaacaAGGACAAgc	AUUGUCCU	m7b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-4289	ttaACAATGacaagc	GCAUUGUG	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-616-3p	ttaaCAATGACaagc	AGUCAUUG	m7b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-676-3p	ttaacaAGGACAagc	CUGUCCUA	m6b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-2355-3p	ttaacaAGGACAAgc	AUUGUCCU	m7b	Disrupted	HPRO6_44357_G52462.1_176959339
hsa-miR-4289	ttaACAATGacaagc	GCAUUGUG	m6b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-616-3p	ttaaCAATGACaagc	AGUCAUUG	m7b	Created	HPRO6_44357_G52462.1_176959339
hsa-miR-676-3p	ttaacaAGGACAagc	CUGUCCUA	m6b	Disrupted	HPRO6_44357_G52462.1_176959339

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094566G>T		COSM1009840	TCGA-B5-A0JY-01	[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-302b-5p	gcTTAAAGaactgga	ACUUUAAC	m6b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-302d-5p	gcTTAAAGaactgga	ACUUUAAC	m6b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-4277	gcttaaAGAACTGga	GCAGUUCU	m7b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-5584-3p	gcttaAAGAACTgga	UAGUUCUU	m7b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-935	gcttaaaTAACTGGa	CCAGUUAC	m7a	Created	HPRO6_44356_G52461.1_176959281
hsa-miR-302b-5p	gcTTAAAGaactgga	ACUUUAAC	m6b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-302d-5p	gcTTAAAGaactgga	ACUUUAAC	m6b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-4277	gcttaaAGAACTGga	GCAGUUCU	m7b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-5584-3p	gcttaAAGAACTgga	UAGUUCUU	m7b	Disrupted	HPRO6_44356_G52461.1_176959281
hsa-miR-935	gcttaaaTAACTGGa	CCAGUUAC	m7a	Created	HPRO6_44356_G52461.1_176959281

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094503G>T		COSM338704	LUAD-D02185	[lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176094491C>A		COSM3570174	TCGA-EE-A29H-06	[skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-3651	tgtGGCTATaaatca	CAUAGCCC	m6b	Created	HPRO6_44355_G52460.1_176959227
hsa-miR-3651	tgtGGCTATaaatca	CAUAGCCC	m6b	Created	HPRO6_44355_G52460.1_176959227

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176093468A>G		COSM1009835	TCGA-B5-A0JY-01	[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-221-5p	tccttcTGCCAGGgc	ACCUGGCA	m7b	Created	HPRO6_44354_G52459.1_176958188
hsa-miR-298	tcCTTCTGCcagggc	AGCAGAAG	m7b	(m6b->m7b)	HPRO6_44354_G52459.1_176958188
hsa-miR-3529-5p	tcctTCTACCagggc	AGGUAGAC	m6b	Disrupted	HPRO6_44354_G52459.1_176958188
hsa-miR-4650-3p	tccTTCTACCagggc	AGGUAGAA	m7b	Disrupted	HPRO6_44354_G52459.1_176958188
hsa-miR-6868-5p	tccttCTGCCAGggc	ACUGGCAG	m7b	Created	HPRO6_44354_G52459.1_176958188
hsa-miR-8073	tccttcTGCCAGGgc	ACCUGGCA	m7b	Created	HPRO6_44354_G52459.1_176958188

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.176093463C>A		COSM1009834	TCGA-AP-A0LE-01	[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-1252-5p	aggtaTCCTTCTacc	AGAAGGAA	m7a	Disrupted	HPRO6_44354_G52459.1_176958188
hsa-miR-3154	aggtatCCTTCTacc	CAGAAGGG	m6b	Disrupted	HPRO6_44354_G52459.1_176958188
hsa-miR-1252-5p	aggtaTCCTTCTacc	AGAAGGAA	m7a	Disrupted	HPRO6_44354_G52459.1_176958188
hsa-miR-3154	aggtatCCTTCTacc	CAGAAGGG	m6b	Disrupted	HPRO6_44354_G52459.1_176958188

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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