SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000522
Gene Symbol: HOXA13

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198310G>A COSM4520368 CSCC-47-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1468-5p gacAAACGGAGgcgg CUCCGUUU m8a Disrupted HPKTA_57332_G61965.1_27237931
hsa-miR-1281 gacaaacGGAGGCGg UCGCCUCC m7b Disrupted HPKTA_57332_G61965.1_27237931

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27197445C>T COSN8516355 951_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-191-5p caataTCCGTTattt CAACGGAA m6b Disrupted HPKTA_57330_G61963.1_27237081

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27196902T>A COSN5099669 HX27T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302c-5p atattaaATGTTAAt UUUAACAU m7b Created HPKTA_57326_G61958.1_27236506
hsa-miR-3143 atattaAATGTTAat AUAACAUU m7b Created HPKTA_57326_G61958.1_27236506
hsa-miR-543 atattaAATGTTaat AAACAUUC m6b Created HPKTA_57326_G61958.1_27236506

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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