SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000522
Gene Symbol: HOXA13

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198336G>T COSM1549702 TCGA-55-7907-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1204 acGCCACGAataaat UCGUGGCC m7a (m7a->m6a) HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-3677-3p acgCCACGAataaat CUCGUGGG m6b Disrupted HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-3677-5p acGCCACTaataaat CAGUGGCC m6b Created HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-4460 acgCCACTAataaat AUAGUGGU m6b Created HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-4727-3p acgCCACTAataaat AUAGUGGG m6b Created HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198336G>A COSM1088891 TCGA-AX-A05Z-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1204 acGCCACGAataaat UCGUGGCC m7a (m7a->m6a) HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-2113 acgcCACAAATaaat AUUUGUGC m7a Created HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-3677-3p acgCCACGAataaat CUCGUGGG m6b Disrupted HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-4474-3p acGCCACAAataaat UUGUGGCU m7a (m6a->m7a) HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-7108-5p acGCCACAaataaat GUGUGGCC m6b Created HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198310G>A COSM4520368 CSCC-47-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1281 gacaaacGGAGGCGg UCGCCUCC m7b Disrupted HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043
hsa-miR-1468-5p gacAAACGGAGgcgg CUCCGUUU m8a Disrupted HHKTA_41329_NM_000522|1044|1083|1.86052146522556|0.67356163335043

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27196926T>A COSN8516354 1428_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p agacctGAAGATagt CAUCUUCC m6b Created HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043
hsa-miR-552-3p agACCTGTagatagt AACAGGUG m6b Disrupted HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043
hsa-miR-7151-3p agaCCTGTAGatagt CUACAGGC m7a Disrupted HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27196902T>A COSN5099669 HX27T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-543 atattaAATGTTaat AAACAUUC m6b Created HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043
hsa-miR-302c-5p atattaaATGTTAAt UUUAACAU m7b Created HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043
hsa-miR-3143 atattaAATGTTAat AUAACAUU m7b Created HHKTA_17049_NM_000522|2467|2506|4.2402582230722|0.67356163335043

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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