SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000522
Gene Symbol: HOXA13

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198284C>A COSM4971206 SJHGG062_A [central_nervous_system][brainstem][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4756-3p gacgaatATCTCTGa CCAGAGAU m7b Created HHFKP_130135_uc003szb.1_6_23

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27198269G>A COSM1088890 TCGA-D1-A177-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-631 gcggCAGGTCacaat AGACCUGG m6b Disrupted HHFKP_130135_uc003szb.1_6_23
hsa-miR-6808-3p gcggcaGGTCACAat GUGUGACC m7b Disrupted HHFKP_130135_uc003szb.1_6_23
hsa-miR-758-3p gcggcagGTCACAAt UUUGUGAC m7b Disrupted HHFKP_130135_uc003szb.1_6_23
hsa-miR-7973 gcggcaGGTCACAat UGUGACCC m7a Disrupted HHFKP_130135_uc003szb.1_6_23
hsa-miR-8070 gcggcagATCACAat AUGUGAUU m6b Created HHFKP_130135_uc003szb.1_6_23

Mutation Mutation ID Sample Name Cancer Type
chr7:g.27196926T>A COSN8516354 1428_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p agacctGAAGATagt CAUCUUCC m6b Created HHFKP_130130_uc003szb.1_1_25
hsa-miR-552-3p agACCTGTagatagt AACAGGUG m6b Disrupted HHFKP_130130_uc003szb.1_1_25
hsa-miR-7151-3p agaCCTGTAGatagt CUACAGGC m7a Disrupted HHFKP_130130_uc003szb.1_1_25

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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