SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000519
Gene Symbol: HBD

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.5234053A>G COSM4787493 CHC1545T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p caaggGCACTTTTtc AAAAGUGC m8a Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-106b-5p caaggGCACTTTttc UAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-1249-3p cAAGGGCGctttttc ACGCCCUU m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-17-5p caaggGCACTTTttc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-20a-5p caaggGCACTTTttc UAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-20b-5p caaggGCACTTTttc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-371b-3p caaGGGCACTTtttc AAGUGCCC m8a Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-518a-3p caaggGCGCTTTttc GAAAGCGC m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-518b caaggGCGCTTTttc CAAAGCGC m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-518c-3p caaggGCGCTTTttc CAAAGCGC m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-518d-3p caaggGCGCTTTttc CAAAGCGC m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-518f-3p caaggGCGCTTTttc GAAAGCGC m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-519d-3p caaggGCACTTTttc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-526b-3p caaggGCACTTTttc GAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-548az-5p caagggCACTTTTtc CAAAAGUG m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-548t-5p caagggCACTTTTtc CAAAAGUG m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-93-5p caaggGCACTTTttc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297

Mutation Mutation ID Sample Name Cancer Type
chr11:g.5234051T>G COSM292910 TCGA-AA-3678-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p aggGCACTTTTtctc AAAAGUGC m8a Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-106b-5p aggGCACTTTttctc UAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-17-5p aggGCACTTTttctc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-20a-5p aggGCACTTTttctc UAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-20b-5p aggGCACTTTttctc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-371b-3p aGGGCACTTtttctc AAGUGCCC m8a (m8a->m7a) HPCB1_7420_G9361.1_5255297
hsa-miR-424-3p agggcACGTTTTctc CAAAACGU m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-519d-3p aggGCACTTTttctc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-526b-3p aggGCACTTTttctc GAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-548az-5p agggCACTTTTtctc CAAAAGUG m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-548t-5p agggCACTTTTtctc CAAAAGUG m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-93-5p aggGCACTTTttctc CAAAGUGC m7b Disrupted HPCB1_7420_G9361.1_5255297

Mutation Mutation ID Sample Name Cancer Type
chr11:g.5234047T>C COSM1253981 ESO-1608 [oesophagus][lower_third][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3915 cacttTTCCTCAgct UUGAGGAA m7b Created HPCB1_7420_G9361.1_5255297
hsa-miR-3928-3p cacttTTCCTCagct GGAGGAAC m6b Created HPCB1_7420_G9361.1_5255297
hsa-miR-4251 cactttTTCTCAGct CCUGAGAA m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-4496 cactTTTCCTCagct GAGGAAAC m7a Created HPCB1_7420_G9361.1_5255297
hsa-miR-539-5p cacttTTTCTCagct GGAGAAAU m6b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-6124 caCTTTTCCtcagct GGGAAAAG m7b (m6b->m7b) HPCB1_7420_G9361.1_5255297
hsa-miR-7160-5p cacttttCCTCAGCt UGCUGAGG m7b Created HPCB1_7420_G9361.1_5255297

Mutation Mutation ID Sample Name Cancer Type
chr11:g.5234046C>A COSM927852 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4251 actttTTCTCAGctg CCUGAGAA m7b Disrupted HPCB1_7420_G9361.1_5255297
hsa-miR-539-5p acttTTTCTCagctg GGAGAAAU m6b Disrupted HPCB1_7420_G9361.1_5255297

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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