SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000475
Gene Symbol: NR0B1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.30309077C>T COSM4108931 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4750-5p ccgaaggCGCCCGAg CUCGGGCG m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 ccgaAGGCGCCCgag GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p ccgaagGCGCCCGAg UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6880-3p ccGAAGGCGcccgag CCGCCUUC m7b (m7b->m6b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-7112-5p ccgaaggTGCCCGag ACGGGCAG m6b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4750-5p ccgaaggCGCCCGAg CUCGGGCG m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 ccgaAGGCGCCCgag GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p ccgaagGCGCCCGAg UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6880-3p ccGAAGGCGcccgag CCGCCUUC m7b (m7b->m6b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-7112-5p ccgaaggTGCCCGag ACGGGCAG m6b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661

Mutation Mutation ID Sample Name Cancer Type
chrX:g.30309076G>A COSM3424719 TCGA-AG-4022-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4750-5p cgaaggCGCCCGAGg CUCGGGCG m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 cgaAGGCGCCCgagg GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p cgaagGCGCCCGAgg UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6880-3p cGAAGGCGcccgagg CCGCCUUC m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4750-5p cgaaggCGCCCGAGg CUCGGGCG m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 cgaAGGCGCCCgagg GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p cgaagGCGCCCGAgg UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6880-3p cGAAGGCGcccgagg CCGCCUUC m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661

Mutation Mutation ID Sample Name Cancer Type
chrX:g.30309073C>A COSM4108930 SNU-175 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2682-3p aggcgccAGAGGCGa CGCCUCUU m7a Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4750-5p aggCGCCCGAGgcga CUCGGGCG m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 AGGCGCCCgaggcga GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p agGCGCCCGAggcga UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-2682-3p aggcgccAGAGGCGa CGCCUCUU m7a Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4750-5p aggCGCCCGAGgcga CUCGGGCG m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-566 AGGCGCCCgaggcga GGGCGCCU m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6499-5p agGCGCCCGAggcga UCGGGCGC m8a Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661

Mutation Mutation ID Sample Name Cancer Type
chrX:g.30309068C>A COSM4862138 TCGA-33-4533-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1181 cccgaGGCGACGctg CCGUCGCC m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4279 cccGAGGAGAcgctg CUCUCCUC m7b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-1181 cccgaGGCGACGctg CCGUCGCC m7b Disrupted HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-4279 cccGAGGAGAcgctg CUCUCCUC m7b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661

Mutation Mutation ID Sample Name Cancer Type
chrX:g.30309065C>T COSM4108928 TCGA-HU-A4GX-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1181 gaGGCGACGctgggt CCGUCGCC m7b (m7b->m6b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-338-3p gaggcgATGCTGGgt UCCAGCAU m7b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6785-3p gaGGCGATGctgggt ACAUCGCC m7b (m6b->m7b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-1181 gaGGCGACGctgggt CCGUCGCC m7b (m7b->m6b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-338-3p gaggcgATGCTGGgt UCCAGCAU m7b Created HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661
hsa-miR-6785-3p gaGGCGATGctgggt ACAUCGCC m7b (m6b->m7b) HHHNE_12538_NR0B1|NM_000475|exon_CDS|-0.583291803732041|-0.656903618679661

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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