SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000454
Gene Symbol: SOD1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.31668556G>A COSM4728904 T3033 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-499a-3p gcttGTGATGTaatt AACAUCAC m7b Created HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364
hsa-miR-499b-3p gcttGTGATGTaatt AACAUCAC m7b Created HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364
hsa-miR-513b-5p gCTTGTGAtgtaatt UUCACAAG m7b Created HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364

Mutation Mutation ID Sample Name Cancer Type
chr21:g.31668538G>C COSM1615985 HX10T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4738-5p aaCGCTGGaagtcgt ACCAGCGC m6b Disrupted HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364
hsa-miR-617 aacgctGGAAGTCgt AGACUUCC m7b Disrupted HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364
hsa-miR-7156-3p aacGCTGCAagtcgt CUGCAGCC m6b Created HHHNH_3611_SOD1|NM_000454|exon_CDS|-8.71774479503658|-0.0609964976473364

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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