SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000441
Gene Symbol: SLC26A4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.107701950C>G COSM1547836 TCGA-78-7152-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p ggaaGCTCAGagttc CCUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-27b-5p ggAAGCTCagagttc AGAGCUUA m6b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-3921 ggaagCTCAGAGttc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4303 ggaaGCTCAGAgttc UUCUGAGC m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4653-5p ggaagCTCAGAGttc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4714-5p ggaagcTCAGAGTTc AACUCUGA m8a Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-6751-3p ggaaGCTCAGagttc ACUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-6787-3p ggaAGCTGAGAgttc UCUCAGCU m8a Created HPRO6_72658_G86792.1_107342379

Mutation Mutation ID Sample Name Cancer Type
chr7:g.107701949A>T COSM1447158 TCGA-D5-6540-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p gaaGCTCAGagttcc CCUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-3921 gaagCTCAGAGttcc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4303 gaaGCTCAGAgttcc UUCUGAGC m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4653-5p gaagCTCAGAGttcc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4680-5p gaagctcAGAGTTCc AGAACUCU m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4714-5p gaagcTCAGAGTTcc AACUCUGA m8a Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-6501-3p gaaGCTCTGagttcc CCAGAGCA m6b Created HPRO6_72658_G86792.1_107342379
hsa-miR-6751-3p gaaGCTCAGagttcc ACUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379

Mutation Mutation ID Sample Name Cancer Type
chr7:g.107701949A>G COSM1447157 TCGA-CM-5349-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p gaaGCTCAGagttcc CCUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-3921 gaagCTCAGAGttcc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4303 gaaGCTCAGAgttcc UUCUGAGC m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4653-5p gaagCTCAGAGttcc UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4680-5p gaagctcAGAGTTCc AGAACUCU m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4714-5p gaagcTCAGAGTTcc AACUCUGA m8a Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-6751-3p gaaGCTCAGagttcc ACUGAGCC m6b Disrupted HPRO6_72658_G86792.1_107342379

Mutation Mutation ID Sample Name Cancer Type
chr7:g.107701948G>T COSM78509 TCGA-24-1567-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3921 aagCTCAGAGttcca UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4303 aaGCTCAGAgttcca UUCUGAGC m7b (m7b->m6b) HPRO6_72658_G86792.1_107342379
hsa-miR-4653-5p aagCTCAGAGttcca UCUCUGAG m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4680-5p aagctcAGAGTTCca AGAACUCU m7b Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-4714-5p aagcTCAGAGTTcca AACUCUGA m8a Disrupted HPRO6_72658_G86792.1_107342379
hsa-miR-556-5p aAGCTCATagttcca GAUGAGCU m7b Created HPRO6_72658_G86792.1_107342379

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser