SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000437
Gene Symbol: PAFAH2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.25962028G>A COSM2234757 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1236-5p gaccGTCACTCAccc UGAGUGAC m8a Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-4792 gaccgtcGCTCACCc CGGUGAGC m7b Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-5708 gaccgTCGCTCAccc AUGAGCGA m7b Disrupted HHFKP_1261_uc001bld.2_11_8

Mutation Mutation ID Sample Name Cancer Type
chr1:g.25962011C>T COSM4460216 CSCC-41-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1249-5p ggggCCCTCCaccat AGGAGGGA m6b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-3151-5p ggggccCCCCACCat GGUGGGGC m7a Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-3165 ggggcccTCCACCat AGGUGGAU m6b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-328-5p gggGCCCCCCaccat GGGGGGGC m7b Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-4447 ggggcCCCCCACCat GGUGGGGG m8a Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-4472 ggggcCCCCCACCat GGUGGGGG m8a Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-6515-5p ggggCCCTCCAccat UUGGAGGG m7b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-6769a-5p ggggcccCCCACCat AGGUGGGU m6b Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-6797-5p ggggCCCTCCaccat AGGAGGGA m6b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-6880-5p ggggccCTCCACCAt UGGUGGAG m8a Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-6885-5p gggGCCCCCCaccat AGGGGGGC m7b Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-7109-5p ggggCCCCCCAccat CUGGGGGG m7b Disrupted HHFKP_1261_uc001bld.2_11_8
hsa-miR-7160-3p gGGGCCCTccaccat CAGGGCCC m7b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-7847-3p ggggcCCTCCACcat CGUGGAGG m7b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-8071 ggggcccTCCACCat CGGUGGAC m6b Created HHFKP_1261_uc001bld.2_11_8
hsa-miR-92a-2-5p ggggccCCCCACCat GGGUGGGG m7b Disrupted HHFKP_1261_uc001bld.2_11_8

Mutation Mutation ID Sample Name Cancer Type
chr1:g.25961609G>T COSN1442138 RK177_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4320 agatGAATCCaaagg GGGAUUCU m6b Created HHFKP_1257_uc001bld.2_7_22
hsa-miR-5004-3p agatgAATCCAAagg CUUGGAUU m7b Created HHFKP_1257_uc001bld.2_7_22
hsa-miR-6815-3p agatGAAGCCAaagg UGGCUUCU m7a Disrupted HHFKP_1257_uc001bld.2_7_22

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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