SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000416
Gene Symbol: IFNGR1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.137198234A>G COSM1440701 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-28-5p atcacatAGCTCCTt AAGGAGCU m7b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3139 atcacatAGCTCCTt UAGGAGCU m7b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3607-5p aTCACATGgctcctt GCAUGUGA m7b Created HHFKP_124554_uc003qho.2_9_9
hsa-miR-4633-3p atcacaTAGCTCCTt AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-505-5p atcacaTGGCTCCtt GGGAGCCA m7b Created HHFKP_124554_uc003qho.2_9_9
hsa-miR-6500-5p atcacaTAGCTCCTt AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-708-5p atcacatAGCTCCTt AAGGAGCU m7b Disrupted HHFKP_124554_uc003qho.2_9_9

Mutation Mutation ID Sample Name Cancer Type
chr6:g.137198233G>T COSM3858548 TCGA-BR-6452-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-190a-5p tcACATATCtcctta UGAUAUGU m7b (m6b->m7b) HHFKP_124554_uc003qho.2_9_9
hsa-miR-190b tcACATATCtcctta UGAUAUGU m7b (m6b->m7b) HHFKP_124554_uc003qho.2_9_9
hsa-miR-28-5p tcacatAGCTCCTTa AAGGAGCU m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3139 tcacatAGCTCCTta UAGGAGCU m7b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-4428 tcacataTCTCCTTa CAAGGAGA m7b Created HHFKP_124554_uc003qho.2_9_9
hsa-miR-4633-3p tcacaTAGCTCCTta AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-6500-5p tcacaTAGCTCCTta AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-6888-5p tcacatATCTCCTTa AAGGAGAU m8a Created HHFKP_124554_uc003qho.2_9_9
hsa-miR-708-5p tcacatAGCTCCTTa AAGGAGCU m8a Disrupted HHFKP_124554_uc003qho.2_9_9

Mutation Mutation ID Sample Name Cancer Type
chr6:g.137198230C>T COSM4463017 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-28-5p catAGCTCCTTatct AAGGAGCU m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3139 catAGCTCCTtatct UAGGAGCU m7b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3173-3p catagCTCCTTatct AAAGGAGG m6b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-3653-3p catagCTTCTTAtct CUAAGAAG m7b Created HHFKP_124554_uc003qho.2_9_9
hsa-miR-4428 catagCTCCTTatct CAAGGAGA m6b Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-4633-3p caTAGCTCCTtatct AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-6500-5p caTAGCTCCTtatct AGGAGCUA m8a Disrupted HHFKP_124554_uc003qho.2_9_9
hsa-miR-708-5p catAGCTCCTTatct AAGGAGCU m8a Disrupted HHFKP_124554_uc003qho.2_9_9

Mutation Mutation ID Sample Name Cancer Type
chr6:g.137197939A>G COSN5083912 HCC25 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3617-5p aaattgTGTCTTagt AAAGACAU m6b Created HHFKP_124552_uc003qho.2_6_172
hsa-miR-4662a-3p aaattgTATCTTagt AAAGAUAG m6b Disrupted HHFKP_124552_uc003qho.2_6_172
hsa-miR-4666a-3p aaATTGTATcttagt CAUACAAU m7b (m7b->m6b) HHFKP_124552_uc003qho.2_6_172
hsa-miR-641 aaattgTGTCTTagt AAAGACAU m6b Created HHFKP_124552_uc003qho.2_6_172
hsa-miR-3617-5p aaattgTGTCTTagt AAAGACAU m6b Created HHFKP_124552_uc003qho.2_6_172
hsa-miR-4662a-3p aaattgTATCTTagt AAAGAUAG m6b Disrupted HHFKP_124552_uc003qho.2_6_172
hsa-miR-4666a-3p aaATTGTATcttagt CAUACAAU m7b (m7b->m6b) HHFKP_124552_uc003qho.2_6_172
hsa-miR-641 aaattgTGTCTTagt AAAGACAU m6b Created HHFKP_124552_uc003qho.2_6_172

Mutation Mutation ID Sample Name Cancer Type
chr6:g.137197620A>C COSN9968383 C0007T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148a-5p agaAGAACTTctgca AAAGUUCU m7b Created HHFKP_124549_uc003qho.2_2_12
hsa-miR-22-5p aGAAGAACTtctgca AGUUCUUC m8a (m7a->m8a) HHFKP_124549_uc003qho.2_2_12
hsa-miR-298 agaagaaCTTCTGCa AGCAGAAG m7b Created HHFKP_124549_uc003qho.2_2_12
hsa-miR-4659a-3p AGAAGAAAttctgca UUUCUUCU m8a Disrupted HHFKP_124549_uc003qho.2_2_12
hsa-miR-4659b-3p AGAAGAAAttctgca UUUCUUCU m8a Disrupted HHFKP_124549_uc003qho.2_2_12
hsa-miR-5584-3p agAAGAACTtctgca UAGUUCUU m7b (m6b->m7b) HHFKP_124549_uc003qho.2_2_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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