SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000414
Gene Symbol: HSD17B4
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.119531319G>A COSM3975132 TCGA-DU-7008-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-362-5p gcctaAAGGATattg AAUCCUUG m6b Disrupted HHFKP_119428_cluster-18185_10_47
hsa-miR-500b-5p gcctaAAGGATattg AAUCCUUG m6b Disrupted HHFKP_119428_cluster-18185_10_47
hsa-miR-501-5p gcctAAAGGATattg AAUCCUUU m7b Disrupted HHFKP_119428_cluster-18185_10_47

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119527193G>A COSM1432664 TCGA-G4-6304-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3124-3p gaAGGAAAGaaacag ACUUUCCU m7b (m6b->m7b) HHFKP_119427_cluster-18185_9_516
hsa-miR-3667-3p gaAGGAAGGaaacag ACCUUCCU m7b (m7b->m6b) HHFKP_119427_cluster-18185_9_516
hsa-miR-6734-3p gaaGGAAGGaaacag CCCUUCCC m6b Disrupted HHFKP_119427_cluster-18185_9_516
hsa-miR-6868-3p gaagGAAGGAAacag UUCCUUCU m7a Disrupted HHFKP_119427_cluster-18185_9_516

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119527181A>G COSM4585349 02-P170 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1228-3p aactgAGGTGTGgaa UCACACCU m7b Created HHFKP_119427_cluster-18185_9_516

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119527160G>A COSM448487 TCGA-BH-A0AV-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2355-3p atatccAGGACAAac AUUGUCCU m7b Disrupted HHFKP_119427_cluster-18185_9_516
hsa-miR-3690 ataTCCAGGacaaac ACCUGGAC m6b Disrupted HHFKP_119427_cluster-18185_9_516
hsa-miR-4254 ataTCCAGGacaaac GCCUGGAG m6b Disrupted HHFKP_119427_cluster-18185_9_516
hsa-miR-431-5p atatcCAAGACAaac UGUCUUGC m7a Created HHFKP_119427_cluster-18185_9_516
hsa-miR-4646-3p atatccaGGACAAac AUUGUCCC m6b Disrupted HHFKP_119427_cluster-18185_9_516
hsa-miR-5004-3p atATCCAAGacaaac CUUGGAUU m7a (m6a->m7a) HHFKP_119427_cluster-18185_9_516
hsa-miR-511-5p atatccAAGACAaac GUGUCUUU m6b Created HHFKP_119427_cluster-18185_9_516
hsa-miR-676-3p atatccAGGACAaac CUGUCCUA m6b Disrupted HHFKP_119427_cluster-18185_9_516

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119499469C>T COSM1486231 TCGA-A1-A0SG-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-541-3p gtttGCCCACCttcg UGGUGGGC m7b Disrupted HHFKP_119426_cluster-18185_8_16
hsa-miR-654-5p gtttGCCCACCttcg UGGUGGGC m7b Disrupted HHFKP_119426_cluster-18185_8_16
hsa-miR-6806-5p gttTGCCTACcttcg UGUAGGCA m7b Created HHFKP_119426_cluster-18185_8_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119499465T>A COSM1671822 SR [skin][face][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4417 tcctgttAGCCCACc GGUGGGCU m7b Created HHFKP_119426_cluster-18185_8_16
hsa-miR-4470 tcctGTTTGCCcacc UGGCAAAC m7b Disrupted HHFKP_119426_cluster-18185_8_16
hsa-miR-664b-5p tcctgTTAGCCCAcc UGGGCUAA m8a Created HHFKP_119426_cluster-18185_8_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119499396T>G COSM1210040 587284 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-5p cTTGGAGTgggagcg AACUCCAA m7b Disrupted HHFKP_119425_cluster-18185_6_13
hsa-miR-3156-3p cttggAGTGGGAGcg CUCCCACU m8a Disrupted HHFKP_119425_cluster-18185_6_13
hsa-miR-532-3p cttggaGTGGGAGcg CCUCCCAC m7b Disrupted HHFKP_119425_cluster-18185_6_13
hsa-miR-6887-3p cttGGAGGGGgagcg UCCCCUCC m7b Created HHFKP_119425_cluster-18185_6_13

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119496625G>A COSM4975168 1N38-VS-1T38 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-376a-2-5p gtgcaacATCTACag GGUAGAUU m6b Created HHFKP_119424_cluster-18185_5_21
hsa-miR-576-3p gtgcaACATCTacag AAGAUGUG m6b Created HHFKP_119424_cluster-18185_5_21

Mutation Mutation ID Sample Name Cancer Type
chr5:g.119493900G>A COSM4561742 CSCC-17-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3180-5p aCTGGAAGaagatct CUUCCAGA m7a Disrupted HHFKP_119423_cluster-18185_4_13
hsa-miR-4778-3p actgGAAGAAGAtct UCUUCUUC m8a Disrupted HHFKP_119423_cluster-18185_4_13
hsa-miR-6875-3p actGGAAGAAgatct AUUCUUCC m7b Disrupted HHFKP_119423_cluster-18185_4_13

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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