SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000335
Gene Symbol: SCN5A

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.38620901G>A COSM1224880 587316 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-523-3p cctgcaCGCGTTCac GAACGCGC m7a Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-523-3p cctgcaCGCGTTCac GAACGCGC m7a Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-523-3p cctgcaCGCGTTCac GAACGCGC m7a Disrupted HPKTA_43223_G46549.1_38662390

Mutation Mutation ID Sample Name Cancer Type
chr3:g.38620890C>T COSM4898720 TCGA-EE-A3JB-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1252-5p tcactTTCCTTCggg AGAAGGAA m7b Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-4671-5p tcactttTCTTCGGg ACCGAAGA m7b Created HPKTA_43223_G46549.1_38662390
hsa-miR-651-3p tcacTTTCCTTcggg AAAGGAAA m7b Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-651-3p tcacTTTCCTTcggg AAAGGAAA m7b Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-4671-5p tcactttTCTTCGGg ACCGAAGA m7b Created HPKTA_43223_G46549.1_38662390
hsa-miR-651-3p tcacTTTCCTTcggg AAAGGAAA m7b Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-4671-5p tcactttTCTTCGGg ACCGAAGA m7b Created HPKTA_43223_G46549.1_38662390
hsa-miR-1252-5p tcactTTCCTTCggg AGAAGGAA m7b Disrupted HPKTA_43223_G46549.1_38662390
hsa-miR-1252-5p tcactTTCCTTCggg AGAAGGAA m7b Disrupted HPKTA_43223_G46549.1_38662390

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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