SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000329
Gene Symbol: RPE65
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.68446841G>C COSM4054999 SS6003109 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6504-5p tgccggtCAGCCAGa UCUGGCUG m7b Created HPCB1_635_G831.1_68912509
hsa-miR-149-5p tgccggtGAGCCAGa UCUGGCUC m7b Disrupted HPCB1_635_G831.1_68912509
hsa-miR-3064-5p tgccggtCAGCCAGa UCUGGCUG m7b Created HPCB1_635_G831.1_68912509
hsa-miR-4284 tgccgGTGAGCCaga GGGCUCAC m7b Disrupted HPCB1_635_G831.1_68912509

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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