SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000328
Gene Symbol: RPGR

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.38288037AACA>A COSM1684665 MCF7 [breast][NS][carcinoma][ER-PR-positive_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4652-3p ttACAGAAacaacaaaca GUUCUGUU m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-8068 ttacagaAACAAACA UGUUUGUU m8a Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4652-3p ttACAGAAacaacaaaca GUUCUGUU m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-8068 ttacagaAACAAACA UGUUUGUU m8a Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4652-3p ttACAGAAacaacaaaca GUUCUGUU m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-8068 ttacagaAACAAACA UGUUUGUU m8a Created HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38288017A>G COSM1732523 OST106PT [bone][NS][osteosarcoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1539 ggaactgGCGCAGGa UCCUGCGC m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-223-3p ggAACTGACgcagga UGUCAGUU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ggaactgACGCAGGa UCCUGCGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-4520-5p ggaactgACGCAGGa CCUGCGUG m7a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-584-3p GGAACTGAcgcagga UCAGUUCC m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-1539 ggaactgGCGCAGGa UCCUGCGC m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-223-3p ggAACTGACgcagga UGUCAGUU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ggaactgACGCAGGa UCCUGCGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-4520-5p ggaactgACGCAGGa CCUGCGUG m7a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-584-3p GGAACTGAcgcagga UCAGUUCC m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-1539 ggaactgGCGCAGGa UCCUGCGC m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-223-3p ggAACTGACgcagga UGUCAGUU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ggaactgACGCAGGa UCCUGCGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-4520-5p ggaactgACGCAGGa CCUGCGUG m7a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-584-3p GGAACTGAcgcagga UCAGUUCC m8a Disrupted HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38288010A>T COSM1637051 PD6355a [bone][humerus][chondrosarcoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1537-5p acgcaggTTACAGCt AGCUGUAA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ACGCAGGAtacagct UCCUGCGU m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-3713 acgcaGGATACagct GGUAUCCG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-490-3p acgCAGGTTacagct CAACCUGG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p acgcaggATACAGCt UGCUGUAU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-649 acgCAGGTTacagct AAACCUGU m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-1537-5p acgcaggTTACAGCt AGCUGUAA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ACGCAGGAtacagct UCCUGCGU m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-3713 acgcaGGATACagct GGUAUCCG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-490-3p acgCAGGTTacagct CAACCUGG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p acgcaggATACAGCt UGCUGUAU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-649 acgCAGGTTacagct AAACCUGU m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-1537-5p acgcaggTTACAGCt AGCUGUAA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ACGCAGGAtacagct UCCUGCGU m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-3713 acgcaGGATACagct GGUAUCCG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-490-3p acgCAGGTTacagct CAACCUGG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p acgcaggATACAGCt UGCUGUAU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-649 acgCAGGTTacagct AAACCUGU m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-1537-5p acgcaggTTACAGCt AGCUGUAA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-3193 ACGCAGGAtacagct UCCUGCGU m8a Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-3713 acgcaGGATACagct GGUAUCCG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-490-3p acgCAGGTTacagct CAACCUGG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p acgcaggATACAGCt UGCUGUAU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-649 acgCAGGTTacagct AAACCUGU m6b Created HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38288005G>A COSM4811549 TCGA-GD-A2C5-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4999-5p ggATACAGCtcttac UGCUGUAU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p ggATACAGCtcttac UGCUGUAU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p ggATACAGCtcttac UGCUGUAU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7
hsa-miR-4999-5p ggATACAGCtcttac UGCUGUAU m7b (m7b->m6b) HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38287996G>T COSM4869815 TCGA-B5-A0JY-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38287996G>C COSM1315498 TCGA-DK-A1A6-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2052 tcttacTCAAAACga UGUUUUGA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-6869-5p tctTACTCAaaacga GUGAGUAG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8055 tcttaCTCAAAacga CUUUGAGC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8081 tcttACTCAAaacga CUUGAGUC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-2052 tcttacTCAAAACga UGUUUUGA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-6869-5p tctTACTCAaaacga GUGAGUAG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8055 tcttaCTCAAAacga CUUUGAGC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8081 tcttACTCAAaacga CUUGAGUC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-2052 tcttacTCAAAACga UGUUUUGA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-6869-5p tctTACTCAaaacga GUGAGUAG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8055 tcttaCTCAAAacga CUUUGAGC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8081 tcttACTCAAaacga CUUGAGUC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-2052 tcttacTCAAAACga UGUUUUGA m7b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-222-5p tctTACTGAaaacga CUCAGUAG m6b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30a-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30d-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-30e-3p tcttACTGAAAacga CUUUCAGU m7b Disrupted HHFKP_151943_cluster-24248_9_7
hsa-miR-545-5p tcTTACTGAaaacga UCAGUAAA m7a (m7a->m6a) HHFKP_151943_cluster-24248_9_7
hsa-miR-6869-5p tctTACTCAaaacga GUGAGUAG m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8055 tcttaCTCAAAacga CUUUGAGC m6b Created HHFKP_151943_cluster-24248_9_7
hsa-miR-8081 tcttACTCAAaacga CUUGAGUC m6b Created HHFKP_151943_cluster-24248_9_7

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38287411G>A COSM4850557 TCGA-Q1-A5R2-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3152-5p gcagcctGAGGCAAt AUUGCCUC m7b Disrupted HHFKP_151942_cluster-24248_8_16
hsa-miR-3155a gcAGCCTGaggcaat CCAGGCUC m6b Disrupted HHFKP_151942_cluster-24248_8_16
hsa-miR-3155b gcAGCCTGaggcaat CCAGGCUC m6b Disrupted HHFKP_151942_cluster-24248_8_16
hsa-miR-6836-3p gcagcctGAGGCAat AUGCCUCC m6b Disrupted HHFKP_151942_cluster-24248_8_16

Mutation Mutation ID Sample Name Cancer Type
chrX:g.38285624G>T COSM612396 TCGA-50-5941-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1269a CAGTCCAGtcaaaac CUGGACUG m8a Disrupted HHFKP_151941_cluster-24248_7_8
hsa-miR-1269b CAGTCCAGtcaaaac CUGGACUG m8a Disrupted HHFKP_151941_cluster-24248_7_8
hsa-miR-3136-5p cagtcCAGTCAaaac CUGACUGA m6b Disrupted HHFKP_151941_cluster-24248_7_8
hsa-miR-3654 caGTCCAGTCaaaac GACUGGAC m8a Disrupted HHFKP_151941_cluster-24248_7_8
hsa-miR-378a-3p cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378b cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378c cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378d cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378e cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378f cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378h cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-378i cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-422a cAGTCCAGTcaaaac ACUGGACU m8a (m8a->m7a) HHFKP_151941_cluster-24248_7_8
hsa-miR-4439 cagtcCAGTCAaaac GUGACUGA m6b Disrupted HHFKP_151941_cluster-24248_7_8
hsa-miR-4790-3p cagtCCATTCAaaac UGAAUGGU m7a Created HHFKP_151941_cluster-24248_7_8
hsa-miR-943 cagtcCAGTCAaaac CUGACUGU m6b Disrupted HHFKP_151941_cluster-24248_7_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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