SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_000318
Gene Symbol: PEX2
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr8:g.76984118G>A COSM606327 TCGA-55-5899-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-324-5p ccagttGGATGCact CGCAUCCC m6b Disrupted HPKTA_60240_G65147.1_77896348
hsa-miR-4272 ccaGTTGAATGcact CAUUCAAC m8a Created HPKTA_60240_G65147.1_77896348

Mutation Mutation ID Sample Name Cancer Type
chr8:g.76984111T>C COSM4163082 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519a-3p gaTGCACTTgaacta AAAGUGCA m7b (m7b->m6b) HPKTA_60240_G65147.1_77896348
hsa-miR-519b-3p gaTGCACTTgaacta AAAGUGCA m7b (m7b->m6b) HPKTA_60240_G65147.1_77896348
hsa-miR-519c-3p gaTGCACTTgaacta AAAGUGCA m7b (m7b->m6b) HPKTA_60240_G65147.1_77896348
hsa-miR-6513-3p gatgCACTTGAacta UCAAGUGU m7a Disrupted HPKTA_60240_G65147.1_77896348
hsa-miR-764 gatGCACCTGaacta GCAGGUGC m7b Created HPKTA_60240_G65147.1_77896348
hsa-miR-125a-3p gatgCACCTGaacta ACAGGUGA m6b Created HPKTA_60240_G65147.1_77896348
hsa-miR-3934-5p gatgCACCTGAacta UCAGGUGU m7a Created HPKTA_60240_G65147.1_77896348
hsa-miR-5000-5p gatgcacCTGAACTa CAGUUCAG m7b Created HPKTA_60240_G65147.1_77896348
hsa-miR-4465 gatgcACTTGAacta CUCAAGUA m6b Disrupted HPKTA_60240_G65147.1_77896348

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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