SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000317
Gene Symbol: PTS
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.112230230G>T COSM1506534 TCGA-78-7155-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-875-5p atggaGAGGTATgtg UAUACCUC m7b Disrupted HHFKP_29680_cluster-3844_6_147
hsa-miR-6800-3p atgGAGAGGTatgtg CACCUCUC m7b Disrupted HHFKP_29680_cluster-3844_6_147

Mutation Mutation ID Sample Name Cancer Type
chr11:g.112230224T>C COSM250148 HCC1954 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3605-3p cagtaCACGGAGagg CCUCCGUG m7b Created HHFKP_29680_cluster-3844_6_147
hsa-miR-136-5p cagtacATGGAGagg ACUCCAUU m6b Disrupted HHFKP_29680_cluster-3844_6_147

Mutation Mutation ID Sample Name Cancer Type
chr11:g.112228621G>T COSM4383040 721LT [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1297 aaaACTTGAAactgt UUCAAGUA m7a Disrupted HHFKP_29677_cluster-3844_3_12
hsa-miR-26a-5p aaaACTTGAAactgt UUCAAGUA m7a Disrupted HHFKP_29677_cluster-3844_3_12
hsa-miR-26b-5p aaaACTTGAAactgt UUCAAGUA m7a Disrupted HHFKP_29677_cluster-3844_3_12
hsa-miR-4465 aaaACTTGAaactgt CUCAAGUA m6b Disrupted HHFKP_29677_cluster-3844_3_12
hsa-miR-548at-5p aaAACTTTaaactgt AAAAGUUA m6b Created HHFKP_29677_cluster-3844_3_12
hsa-miR-561-3p aAAACTTTaaactgt CAAAGUUU m7b Created HHFKP_29677_cluster-3844_3_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser