SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000232
Gene Symbol: SGCB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033552TTTAA>A COSM290078 TCGA-AG-A014-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4453 cagtaaCAAGCTgga GAGCUUGG m6b Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-4538 cagtaaCAAGCTgga GAGCUUGG m6b Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-548at-5p cagTAACTTTaaagctgga AAAAGUUA m7b Disrupted HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-561-3p cagtAACTTTaaagctgga CAAAGUUU m6b Disrupted HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341

Mutation Mutation ID Sample Name Cancer Type
chr4:g.52033546G>T COSM447922 TCGA-BH-A0HN-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3713 aaagctGGATACatt GGUAUCCG m6b Disrupted HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-let-7f-2-3p aaagCTGTATAcatt CUAUACAG m7b Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-1185-1-3p aaagCTGTATAcatt AUAUACAG m7b Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-1185-2-3p aaagCTGTATAcatt AUAUACAG m7b Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-4789-5p aaagcTGTATACatt GUAUACAC m7a Created HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341
hsa-miR-5586-5p aaaGCTGGATAcatt UAUCCAGC m8a Disrupted HHHNE_16547_SGCB|NM_000232|exon_CDS|-5.87060937577864|-0.0264184394445341

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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