SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000209
Gene Symbol: PDX1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27924337AGG>AAA COSM4566850 CSCC-29-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6868-3p ctggAGAAGGAgttcct UUCCUUCU m7b Disrupted HHFKP_40649_uc001urt.2_2_8
hsa-miR-1248 ctggAGAAGGagttcct ACCUUCUU m6b Disrupted HHFKP_40649_uc001urt.2_2_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27924312C>T COSM4652385 SNU-C4 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-933 ctacacgTGCGCACa UGUGCGCA m7b Created HHFKP_40649_uc001urt.2_2_8
hsa-miR-4783-5p ctacacGCGCGCaca GGCGCGCC m6b Disrupted HHFKP_40649_uc001urt.2_2_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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