SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000195
Gene Symbol: HPS1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425711G>A COSM2057110 LS180 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1268a ccccagCACGCCCct CGGGCGUG m7b Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-1268b ccccagCACGCCCct CGGGCGUG m7b Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-3178 ccccagCGCGCCCCt GGGGCGCG m8a Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-4731-5p CCCCAGCAcgcccct UGCUGGGG m8a Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-1268a ccccagCACGCCCct CGGGCGUG m7b Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-1268b ccccagCACGCCCct CGGGCGUG m7b Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-3178 ccccagCGCGCCCCt GGGGCGCG m8a Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-4731-5p CCCCAGCAcgcccct UGCUGGGG m8a Created HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396

Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425693C>T COSM4460892 CSCC-62-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548aa ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548ap-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548t-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548aa ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-548ap-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-548t-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-548aa ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548ap-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548t-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-548aa ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-548ap-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-548t-3p ccTGGTTTTgtccca AAAAACCA m7b (m6b->m7b) HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396

Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425679G>A COSM4691072 T595 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6884-3p agcTGATGGatggct CCCAUCAC m6b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-7151-5p agctGATGGATggct GAUCCAUC m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-6884-3p agcTGATGGatggct CCCAUCAC m6b Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-7151-5p agctGATGGATggct GAUCCAUC m7b Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-6884-3p agcTGATGGatggct CCCAUCAC m6b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-7151-5p agctGATGGATggct GAUCCAUC m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-6884-3p agcTGATGGatggct CCCAUCAC m6b Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396
hsa-miR-7151-5p agctGATGGATggct GAUCCAUC m7b Disrupted HHHNA_3375_HPS1|NM_000195|exon_CDS|-3.26626944234915|-0.443673052828396

Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425676T>G COSM3966824 TCGA-DU-6407-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4290 tgatGGAGGGCttct UGCCCUCC m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4687-5p tgatgGAGGGCTtct CAGCCCUC m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4786-3p tgatggaTGGCTTCt UGAAGCCA m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-7151-5p tGATGGATggcttct GAUCCAUC m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4290 tgatGGAGGGCttct UGCCCUCC m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4687-5p tgatgGAGGGCTtct CAGCCCUC m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4786-3p tgatggaTGGCTTCt UGAAGCCA m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-7151-5p tGATGGATggcttct GAUCCAUC m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472

Mutation Mutation ID Sample Name Cancer Type
chr10:g.98425670C>T COSM913695 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3688-3p atggctTTTCCATgc UAUGGAAA m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4434 atggCTTCTCCatgc AGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4516 atggCTTCTCCatgc GGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4531 atggcTTCTCCATgc AUGGAGAA m8a Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4786-3p aTGGCTTCtccatgc UGAAGCCA m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-5703 atggCTTCTCCatgc AGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-6124 atggCTTTTCCatgc GGGAAAAG m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-3688-3p atggctTTTCCATgc UAUGGAAA m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4434 atggCTTCTCCatgc AGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4516 atggCTTCTCCatgc GGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4531 atggcTTCTCCATgc AUGGAGAA m8a Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-4786-3p aTGGCTTCtccatgc UGAAGCCA m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-5703 atggCTTCTCCatgc AGGAGAAG m7b Disrupted HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472
hsa-miR-6124 atggCTTTTCCatgc GGGAAAAG m7b Created HHHNA_3374_HPS1|NM_000195|exon_CDS|-3.00035410318231|-0.90034436319472

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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