SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000178
Gene Symbol: GSS
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.34951804G>A COSM3545603 TCGA-D3-A1Q6-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4267 gctagagGAGCTGGc UCCAGCUC m7b Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-4268 gctaGAGGAGCtggc GGCUCCUC m7b Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-4684-5p gcTAGAGAagctggc CUCUCUAC m6b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-517-5p gCTAGAGGagctggc CCUCUAGA m7a Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-6736-3p gctagaGGAGCTGgc UCAGCUCC m7b Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-942-5p gctAGAGAAGctggc UCUUCUCU m7b Created HHFKP_87213_cluster-14688_5_9

Mutation Mutation ID Sample Name Cancer Type
chr20:g.34951795C>T COSM1253863 ESO-0001 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1202 GCTGGCACggcaggc GUGCCAGC m8a Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-4659a-5p gctggCATGGCAGgc CUGCCAUG m8a Created HHFKP_87213_cluster-14688_5_9
hsa-miR-4659b-5p gctggCATGGCAggc UUGCCAUG m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-4722-3p gctggcaTGGCAGGc ACCUGCCA m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-4769-3p gctggcATGGCAGgc UCUGCCAU m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-6727-3p gctggcaTGGCAGGc UCCUGCCA m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-6817-5p gctggcATGGCAGgc UCUGCCAU m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-6872-3p gctGGCATGGcaggc CCCAUGCC m7b Created HHFKP_87213_cluster-14688_5_9

Mutation Mutation ID Sample Name Cancer Type
chr20:g.34951792GC>C COSM391137 LUAD-B01811 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1234-3p tggcacgCAGGCCGt UCGGCCUG m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-3193 tggcACGCAGGccgt UCCUGCGU m7b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-4520-5p tggCACGCAGGccgt CCUGCGUG m8a Created HHFKP_87213_cluster-14688_5_9
hsa-miR-4763-5p tggcacGGCAGGCcgt CGCCUGCC m7b Disrupted HHFKP_87213_cluster-14688_5_9
hsa-miR-6821-5p tggCACGCAggccgt GUGCGUGG m6b Created HHFKP_87213_cluster-14688_5_9
hsa-miR-7107-5p tggcacgCAGGCCGt UCGGCCUG m7b Created HHFKP_87213_cluster-14688_5_9
Mutation Mutation ID Sample Name Cancer Type
chr20:g.34946076C>T COSM3972524 TCGA-DB-A64L-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.34946072C>T COSM1307312 TCGA-DK-A1AC-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4271 tcacgctCTTCCCCt GGGGGAAG m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-4668-5p tcacgcTTTTCCCct AGGGAAAA m7b Created HHFKP_87212_cluster-14688_4_37
hsa-miR-4725-3p tcacgctCTTCCCCt UGGGGAAG m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6077 tcacgCTCTTCCCct GGGAAGAG m8a Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6124 tcacgCTTTTCCCct GGGAAAAG m8a Created HHFKP_87212_cluster-14688_4_37
hsa-miR-6780b-5p tcacgctCTTCCCCt UGGGGAAG m7b Disrupted HHFKP_87212_cluster-14688_4_37

Mutation Mutation ID Sample Name Cancer Type
chr20:g.34946067C>T COSM3545601 TCGA-EE-A3AA-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1914-3p ctcttCCCCTCactg GGAGGGGU m6b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-3125 ctcTTCCTCTcactg UAGAGGAA m7b Created HHFKP_87212_cluster-14688_4_37
hsa-miR-3916 ctcTTCCTCTcactg AAGAGGAA m7b Created HHFKP_87212_cluster-14688_4_37
hsa-miR-4271 ctCTTCCCCtcactg GGGGGAAG m7b (m7b->m6b) HHFKP_87212_cluster-14688_4_37
hsa-miR-4725-3p ctCTTCCCCtcactg UGGGGAAG m7b (m7b->m6b) HHFKP_87212_cluster-14688_4_37
hsa-miR-6077 CTCTTCCCctcactg GGGAAGAG m8a Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6734-5p ctcttCCCCTCActg UUGAGGGG m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6738-5p ctcttCCCCTCactg CGAGGGGU m6b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6780b-5p ctCTTCCCCtcactg UGGGGAAG m7b (m7b->m6b) HHFKP_87212_cluster-14688_4_37
hsa-miR-6783-5p ctcTTCCCCTcactg UAGGGGAA m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-6859-5p ctcTTCCTCTCactg GAGAGGAA m8a Created HHFKP_87212_cluster-14688_4_37

Mutation Mutation ID Sample Name Cancer Type
chr20:g.34946056C>T COSM4471605 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3144-5p actGGTCCCCagtgc AGGGGACC m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-4652-5p actgGTCCCCagtgc AGGGGACU m6b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-4667-5p actggTCCCCAGTgc ACUGGGGA m8a Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-4700-5p actggTCCCCAGtgc UCUGGGGA m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-4786-5p acTGGTCTCcagtgc UGAGACCA m7b (m6b->m7b) HHFKP_87212_cluster-14688_4_37
hsa-miR-6810-5p actgGTCCCCAgtgc AUGGGGAC m7b Disrupted HHFKP_87212_cluster-14688_4_37
hsa-miR-8089 actggTCCCCAGtgc CCUGGGGA m7b Disrupted HHFKP_87212_cluster-14688_4_37

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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